KCC000476A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000476A_C01 KCC000476A_c01
GCCTGAAGCTGTACGTTGACCCCGCCGTCGCTGCCGTGTGCAACAACAAGTTCGGTTGCT
GCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCACCTCCACCGTGCCTGGCCAGTGCA
AGGGCTCGATCACCCCCTTCACCCTGACCGGCACCACCGATATCAAGAGCTCTTTCCTGT
GGGACTCCACCCGTCCCGTCCTGAAGTTCACCAAGCTGGACCTGTCCTACGACCTGGGCG
TTGCCGGCGCTGCCCTGTGCTTTTCCCTGAAGGGCCCCGGCTGCACCCGCCTGAACCAGC
TCTGCGTGTCGGGCAAGCAGTGCCCCACGGCTGTGTTCAACGGCCAGACGCCGTACAACA
CGTGCTGCCCCTCCTTCTACCTGGACGCGTAAAGCGCGCTACATCAGCGAGCGTTGCGCG
CGAGTTTGGCTGCTGTCACGGAGCGACTATTCTTCGGTATCCGTTGAAGCGGCTGCGTGC
TAGGGGCTTGTGCGGGTCGTGCGTGCTTACGCAGTGATGTGAAGACGGAGGGGAGCGGCC
ACCTGTCGCCCCTCTTGTCTGCTTTTTTGCAGGGCTCATGTTGGGCAGAGATGACTTGAC
GTGTGCGTGCGAATTAATCGTGTGCGAGATGGAGAGGTGACGGGACTACACATGTGTGCT
GGACTCGCTTTTACACAGGAGCTTACATGTGCCTGTTGCGAAATTCTGCCGGTGCAGAGA
TGACGCTGATACATACCGGAATGACTTGTTTGCGTGGATTGTGTGGTTTGTCGTTTGGTG
TGTTCTCTGAAGGTCAGAATACATCACTAGAATGTGCTCATCATGATAATGCGTGCCATG
CAAACCTTAGCGCGACGCCAAGAGGGTCAGTATCTCCAGCCTCGCTGCTCGGTTTGCCAA
CCATTACACCCTTCGCATCGAAGAGTTGGCTCGGCAGCAATCTGCCTCTTCTCTACCTTG
GTCTGCCAGAGCAGACGCTTCTTCTCTTGTATGGGAGGTATTCTATCTGCCGCAGTTCAT
ACGGGCAGCGGCGTTACGCGCAGAACTCGCTTGCAGGCTCTCTGTAAGGACTACTGCGTC
C


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000476A_C01 KCC000476A_c01
         (1081 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

prf||1604369A sulfated surface glycoprotein SSG185                    145  1e-33
sp|P21997|SSGP_VOLCA SULFATED SURFACE GLYCOPROTEIN 185 (SSG 185)...   145  1e-33
ref|NP_922922.1| Wasp-binding protein [Mus musculus] gi|34785992...    35  2e-04
pir||T43556 Wiskott-Aldrich syndrome protein homolog - fission y...    48  3e-04
ref|NP_594758.1| wiskott-aldrich syndrome protein homolog 1 [Sch...    48  3e-04

>prf||1604369A sulfated surface glycoprotein SSG185
          Length = 453

 Score =  145 bits (366), Expect = 1e-33
 Identities = 74/124 (59%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
 Frame = +3

Query: 3   LKLYVDPAVAAVCNNKFG-CCKQGLQKIELEATSTVPGQCKGSITPFTLTGTTDIKSSFL 179
           LK+ VD A AA CNN  G CC  GL+K+EL A     G+CKGSI PFTL+ T +I+SSF 
Sbjct: 331 LKISVDNAAAATCNNGLGGCCSDGLEKVELFAN----GKCKGSILPFTLSNTAEIRSSFS 386

Query: 180 WDSTRPVLKFTKLDLSYDLGVAGAALCFSLKGPGCTRLNQLCVSGKQCPTAVFNGQTPYN 359
           WDSTRPVLKFT+L L+Y  GVAG +LCF++KG GCT+   LC  G+ C  AVFN   P N
Sbjct: 387 WDSTRPVLKFTRLGLTYAQGVAGGSLCFNIKGAGCTKFADLC-PGRGCTVAVFN--NPDN 443

Query: 360 TCCP 371
           TCCP
Sbjct: 444 TCCP 447

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 26/71 (36%), Positives = 30/71 (41%), Gaps = 1/71 (1%)
 Frame = +1

Query: 82  SSSRPP-PPCLASARARSPPSP*PAPPISRALSCGTPPVPS*SSPSWTCPTTWALPALPC 258
           +SSRPP PP      +  PPSP P PP         PP PS   P    P     P  P 
Sbjct: 237 ASSRPPSPPPSPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPS 296

Query: 259 AFP*RAPAAPA 291
             P R P +P+
Sbjct: 297 PSPPRKPPSPS 307

>sp|P21997|SSGP_VOLCA SULFATED SURFACE GLYCOPROTEIN 185 (SSG 185) gi|99441|pir||A33647
           sulfated surface glycoprotein 185 - Volvox carteri
           gi|1405821|emb|CAA35953.1| SULFATED SURFACE GLYCOPROTEIN
           185 [Volvox carteri]
          Length = 485

 Score =  145 bits (366), Expect = 1e-33
 Identities = 74/124 (59%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
 Frame = +3

Query: 3   LKLYVDPAVAAVCNNKFG-CCKQGLQKIELEATSTVPGQCKGSITPFTLTGTTDIKSSFL 179
           LK+ VD A AA CNN  G CC  GL+K+EL A     G+CKGSI PFTL+ T +I+SSF 
Sbjct: 363 LKISVDNAAAATCNNGLGGCCSDGLEKVELFAN----GKCKGSILPFTLSNTAEIRSSFS 418

Query: 180 WDSTRPVLKFTKLDLSYDLGVAGAALCFSLKGPGCTRLNQLCVSGKQCPTAVFNGQTPYN 359
           WDSTRPVLKFT+L L+Y  GVAG +LCF++KG GCT+   LC  G+ C  AVFN   P N
Sbjct: 419 WDSTRPVLKFTRLGLTYAQGVAGGSLCFNIKGAGCTKFADLC-PGRGCTVAVFN--NPDN 475

Query: 360 TCCP 371
           TCCP
Sbjct: 476 TCCP 479

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 26/71 (36%), Positives = 30/71 (41%), Gaps = 1/71 (1%)
 Frame = +1

Query: 82  SSSRPP-PPCLASARARSPPSP*PAPPISRALSCGTPPVPS*SSPSWTCPTTWALPALPC 258
           +SSRPP PP      +  PPSP P PP         PP PS   P    P     P  P 
Sbjct: 237 ASSRPPSPPPSPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPS 296

Query: 259 AFP*RAPAAPA 291
             P R P +P+
Sbjct: 297 PSPPRKPPSPS 307

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 21/57 (36%), Positives = 23/57 (39%)
 Frame = +1

Query: 88  SRPPPPCLASARARSPPSP*PAPPISRALSCGTPPVPS*SSPSWTCPTTWALPALPC 258
           S PPPP         PP P P+PP  R     +PPVP   SP    P     P   C
Sbjct: 277 SPPPPPPPPPPPPPPPPPPSPSPP--RKPPSPSPPVPPPPSPPSVLPAATGFPFCEC 331

>ref|NP_922922.1| Wasp-binding protein [Mus musculus] gi|34785992|gb|AAH57854.1|
           1110014J05Rik protein [Mus musculus]
          Length = 440

 Score = 35.4 bits (80), Expect(2) = 2e-04
 Identities = 18/42 (42%), Positives = 24/42 (56%)
 Frame = +1

Query: 25  PSLPCATTSSVAASRACRRSSSRPPPPCLASARARSPPSP*P 150
           PSLP  +  + A+    + SSS PPPP     RA +PP+P P
Sbjct: 154 PSLPDLSRPNTASGTGMKHSSSAPPPP-PPGRRANAPPTPLP 194

 Score = 32.3 bits (72), Expect(2) = 2e-04
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
 Frame = +2

Query: 134 PLHPDRHHRYQELFPVG------LHPSRPEVHQAGPVLRPGRCRRCPVLFPEGPRLHPPE 295
           PLH ++   Y    P+       LHP R E H A P ++P          P G  L PP 
Sbjct: 194 PLHSNKAQAYNREKPLPPTPGQRLHPGR-EGHPAPPPVKPPPSPVNIRTGPSGQSLAPPP 252

Query: 296 PALRVGQAVPHG 331
           P  R    VP+G
Sbjct: 253 PPYRQPPGVPNG 264

>pir||T43556 Wiskott-Aldrich syndrome protein homolog - fission yeast
           (Schizosaccharomyces pombe) gi|2708709|gb|AAB92587.1|
           Wiskott-Aldrich Syndrome protein homolog
           [Schizosaccharomyces pombe]
          Length = 574

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 33/91 (36%), Positives = 43/91 (46%), Gaps = 9/91 (9%)
 Frame = +1

Query: 82  SSSRPPPPCLASARARSPPSP*PA---------PPISRALSCGTPPVPS*SSPSWTCPTT 234
           S+ R PPP  +S    +PP+P PA         PP+  A    TPPVP+  S   + P +
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPS 430

Query: 235 WALPALPCAFP*RAPAAPA*TSSACRASSAP 327
              P+ P + P  APAAP    SA  A   P
Sbjct: 431 LP-PSAPPSLPMGAPAAPPLPPSAPIAPPLP 460

 Score = 38.1 bits (87), Expect = 0.27
 Identities = 33/90 (36%), Positives = 38/90 (41%)
 Frame = +1

Query: 19  TPPSLPCATTSSVAASRACRRSSSRPPPPCLASARARSPPSP*PAPPISRALSCGTPPVP 198
           TPPSLP +   S+  S           PP L      +PP P P+ PI+  L  G P  P
Sbjct: 419 TPPSLPPSAPPSLPPS----------APPSLPMGAPAAPPLP-PSAPIAPPLPAGMPAAP 467

Query: 199 S*SSPSWTCPTTWALPALPCAFP*RAPAAP 288
                    P   A PA P A P  APAAP
Sbjct: 468 ---------PLPPAAPAPPPA-PAPAPAAP 487

 Score = 37.7 bits (86), Expect = 0.35
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
 Frame = +1

Query: 22  PPSLPCATTSSVAASRACRRSSSRPPPPCLASARARSPPS-P*PAPPISRALSCGTPPVP 198
           PP++P  +  ++       R+S+ PP P   S    +PPS P  APP     +   PP+P
Sbjct: 392 PPAIPGRSAPALPPLGNASRTST-PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450

Query: 199 S*SSPSWTCPTTWALPALPCAFP*RAPAAPA*TSSACRASSAP 327
                  + P    LPA   A P   PAAPA   +   A +AP
Sbjct: 451 P------SAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487

 Score = 37.0 bits (84), Expect = 0.59
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
 Frame = +1

Query: 19  TPPSLPCATTSSVAASRACRRSSSRPPPP----CLASARARSPPSP*PAPPISRALSCGT 186
           +PP+ P    + V+ + A   +S  P PP      A+A A +   P P PP SR  + G 
Sbjct: 266 SPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRR-NRGK 324

Query: 187 PPVPS*SS-----PSWTCPTTWALPALPCAFP*RAPAAPA*TSSACRASSAPRLCSTARR 351
           PP+ + SS     P    P + A  ++P     R+   P    SA      P   S++R 
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384

Query: 352 RTTRAAPP 375
            +   APP
Sbjct: 385 VSNPPAPP 392

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 48/155 (30%), Positives = 58/155 (36%), Gaps = 33/155 (21%)
 Frame = +1

Query: 13  TLTPPSLPCATTSSVAASRACRRSSSRPPPPCLASARARSPP-----------SP*PAPP 159
           T  PP  P ++  S AA  A ++   RPPPP   S R R  P            P P PP
Sbjct: 287 TSKPPLPPPSSRVSAAALAANKK---RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343

Query: 160 ISRALS---------CGTPPVPS*SSPSW--------TCPTTWALPALPCAFP*R-APAA 285
            S A              PP P  S+PS         +       PA P A P R APA 
Sbjct: 344 RSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL 403

Query: 286 P----A*TSSACRASSAPRLCSTARRRTTRAAPPS 378
           P    A  +S     + P L  +A      +APPS
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPS 438

>ref|NP_594758.1| wiskott-aldrich syndrome protein homolog 1 [Schizosaccharomyces
           pombe] gi|7493721|pir||T38819 wiskott-aldrich syndrome
           protein homolog 1 - fission yeast  (Schizosaccharomyces
           pombe) gi|2388986|emb|CAB11718.1| SPAC4F10.15c
           [Schizosaccharomyces pombe]
          Length = 574

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 33/91 (36%), Positives = 43/91 (46%), Gaps = 9/91 (9%)
 Frame = +1

Query: 82  SSSRPPPPCLASARARSPPSP*PA---------PPISRALSCGTPPVPS*SSPSWTCPTT 234
           S+ R PPP  +S    +PP+P PA         PP+  A    TPPVP+  S   + P +
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPS 430

Query: 235 WALPALPCAFP*RAPAAPA*TSSACRASSAP 327
              P+ P + P  APAAP    SA  A   P
Sbjct: 431 LP-PSAPPSLPMGAPAAPPLPPSAPIAPPLP 460

 Score = 38.1 bits (87), Expect = 0.27
 Identities = 33/90 (36%), Positives = 38/90 (41%)
 Frame = +1

Query: 19  TPPSLPCATTSSVAASRACRRSSSRPPPPCLASARARSPPSP*PAPPISRALSCGTPPVP 198
           TPPSLP +   S+  S           PP L      +PP P P+ PI+  L  G P  P
Sbjct: 419 TPPSLPPSAPPSLPPS----------APPSLPMGAPAAPPLP-PSAPIAPPLPAGMPAAP 467

Query: 199 S*SSPSWTCPTTWALPALPCAFP*RAPAAP 288
                    P   A PA P A P  APAAP
Sbjct: 468 ---------PLPPAAPAPPPA-PAPAPAAP 487

 Score = 37.7 bits (86), Expect = 0.35
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
 Frame = +1

Query: 22  PPSLPCATTSSVAASRACRRSSSRPPPPCLASARARSPPS-P*PAPPISRALSCGTPPVP 198
           PP++P  +  ++       R+S+ PP P   S    +PPS P  APP     +   PP+P
Sbjct: 392 PPAIPGRSAPALPPLGNASRTST-PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450

Query: 199 S*SSPSWTCPTTWALPALPCAFP*RAPAAPA*TSSACRASSAP 327
                  + P    LPA   A P   PAAPA   +   A +AP
Sbjct: 451 P------SAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487

 Score = 37.0 bits (84), Expect = 0.59
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
 Frame = +1

Query: 19  TPPSLPCATTSSVAASRACRRSSSRPPPP----CLASARARSPPSP*PAPPISRALSCGT 186
           +PP+ P    + V+ + A   +S  P PP      A+A A +   P P PP SR  + G 
Sbjct: 266 SPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRR-NRGK 324

Query: 187 PPVPS*SS-----PSWTCPTTWALPALPCAFP*RAPAAPA*TSSACRASSAPRLCSTARR 351
           PP+ + SS     P    P + A  ++P     R+   P    SA      P   S++R 
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384

Query: 352 RTTRAAPP 375
            +   APP
Sbjct: 385 VSNPPAPP 392

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 48/155 (30%), Positives = 58/155 (36%), Gaps = 33/155 (21%)
 Frame = +1

Query: 13  TLTPPSLPCATTSSVAASRACRRSSSRPPPPCLASARARSPP-----------SP*PAPP 159
           T  PP  P ++  S AA  A ++   RPPPP   S R R  P            P P PP
Sbjct: 287 TSKPPLPPPSSRVSAAALAANKK---RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343

Query: 160 ISRALS---------CGTPPVPS*SSPSW--------TCPTTWALPALPCAFP*R-APAA 285
            S A              PP P  S+PS         +       PA P A P R APA 
Sbjct: 344 RSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL 403

Query: 286 P----A*TSSACRASSAPRLCSTARRRTTRAAPPS 378
           P    A  +S     + P L  +A      +APPS
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPS 438



EST assemble image


clone accession position
1 LC030c12_r AV621040 1 629
2 HC065h12_r AV636910 36 481
3 HC083e03_r AV638222 72 579
4 HC009g04_r AV632565 74 585
5 CM028e06_r AV387708 139 701
6 HC007a09_r AV632348 141 646
7 HC042g10_r AV635170 149 708
8 LCL086c02_r AV630913 168 413
9 CM039f04_r AV388987 178 582
10 CL32d12_r AV394870 321 842
11 HC098h03_r AV639400 601 947
12 CL40g12_r AV395379 608 1088
13 CL40f12_r AV395378 609 1094
14 HC036e11_r AV634691 756 1311
15 MX219f12_r BP090152 779 1106




Chlamydomonas reinhardtii
Kazusa DNA Research Institute