KCC000470A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000470A_C01 KCC000470A_c01
tgatgttgcataacgtgcacagccaggccaaccggctgttggttggctgtgtttggacac
atgttgcttacctgcaccgcGCTCTGTACGGAGAAACACAGGCGTGTATCAACGGTAATT
GCTAGTGAGTAGTAAGCACGTGCACTTTCTTTGCCTGCTGATTTTGTTTTGCTGCGTAAA
CGAGTCCTATAGTACATGGAAGGACAAAGCACTTCTGTTTGATTGAGCCGGCGTATGTCG
ACCTAGGCCATCATGCTATCAGAGCGCTTTGCAATGCCAGGCAGTCGCATTATGATGGCC
GCATTATGCCGGATGCCTTGATACTAGAGAGGGGGCAGGCCGCCGCAAGTGCACTCAAGA
GTGTGCTGCCTGCTGCGTGTGGCCTAGCTGGTCGGCTGATTGAGGGCAGGCTGCTGAGAG
GCGCTGCCGGGCGTGTGCAGTCGGGGGAAAGCAAAGTAAAGGATAAGGGTAGCACAGGTA
TCACTGTTGTAAGTTCCCTTGAGGTGCTCGCGTGTACTTGTCTGGGGCGCCGCGGACATA
Ttaactgggatcgtgtctcagaagcccttcacctcacacaatgtatatggtacatcaggc
tgatgtcaaactgacagtctc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000470A_C01 KCC000470A_c01
         (621 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA25492.1| KIAA0566 protein [Homo sapiens]                        37  0.23
ref|NP_077816.1| ATPase, Class V, type 10A; ATPase type IV, phos...    37  0.23
ref|NP_640908.1| conserved hypothetical protein [Xanthomonas axo...    34  1.5
ref|XP_142697.1| hypothetical protein XP_142697 [Mus musculus]         33  4.4
ref|XP_070909.2| hypothetical protein XP_070909 [Homo sapiens]         33  4.4

>dbj|BAA25492.1| KIAA0566 protein [Homo sapiens]
          Length = 1163

 Score = 37.0 bits (84), Expect = 0.23
 Identities = 27/87 (31%), Positives = 41/87 (47%)
 Frame = -3

Query: 559  ETRSQLICPRRPRQVHASTSRELTTVIPVLPLSFTLLSPDCTRPAAPLSSLPSISRPARP 380
            ET +Q   P+     H+S  R + T +P+   S+    P C+  A+   S   +S P R 
Sbjct: 987  ETFAQGRLPKDSGTEHSS-GRTVKTSVPLSQPSWHTQQPVCSLEASGEPSTVDMSMPVRE 1045

Query: 379  HAAGSTLLSALAAACPLSSIKASGIMR 299
            H    TLL  L+A  P+SS     ++R
Sbjct: 1046 H----TLLEGLSAPAPMSSAPGEAVLR 1068

>ref|NP_077816.1| ATPase, Class V, type 10A; ATPase type IV, phospholipid transporting
            (P-type) (putative); ATPase, Class V, type 10C [Homo
            sapiens] gi|22261792|sp|O60312|A10C_HUMAN Potential
            phospholipid-transporting ATPase VC (ATPVC)
            (Aminophospholipid translocase VC)
            gi|13878299|gb|AAK33100.1| aminophospholipid-transporting
            ATPase [Homo sapiens] gi|14009443|dbj|BAB47392.1|
            putative aminophospholipid translocase [Homo sapiens]
            gi|30354081|gb|AAH52251.1| ATPase, Class V, type 10A
            [Homo sapiens]
          Length = 1499

 Score = 37.0 bits (84), Expect = 0.23
 Identities = 27/87 (31%), Positives = 41/87 (47%)
 Frame = -3

Query: 559  ETRSQLICPRRPRQVHASTSRELTTVIPVLPLSFTLLSPDCTRPAAPLSSLPSISRPARP 380
            ET +Q   P+     H+S  R + T +P+   S+    P C+  A+   S   +S P R 
Sbjct: 1323 ETFAQGRLPKDSGTEHSS-GRTVKTSVPLSQPSWHTQQPVCSLEASGEPSTVDMSMPVRE 1381

Query: 379  HAAGSTLLSALAAACPLSSIKASGIMR 299
            H    TLL  L+A  P+SS     ++R
Sbjct: 1382 H----TLLEGLSAPAPMSSAPGEAVLR 1404

>ref|NP_640908.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306] gi|21106652|gb|AAM35444.1| conserved
           hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 274

 Score = 34.3 bits (77), Expect = 1.5
 Identities = 35/107 (32%), Positives = 52/107 (47%), Gaps = 9/107 (8%)
 Frame = -3

Query: 568 RASETRSQLICPRR--PRQVHASTSRELTTVIPVLPLSFTLLSPDCTRP----AAPLSSL 407
           R  ++ S  ICP R  P ++ +      TT   +LPL+ TL    C++P    AAP +  
Sbjct: 2   RFLQSSSVCICPTRVVPTRLSSHGVPMKTTHKLLLPLALTLAIAACSKPAENTAAPAAET 61

Query: 406 P-SISRPARPHAAGSTLLSALAAACPLSSIKASG--IMRPS*CDCLA 275
           P + + PA   AA +   +A A+  P   + ASG   + PS  D LA
Sbjct: 62  PAAATAPADAAAAPAPAPAAAASTAPAVEV-ASGTYTLDPSHTDVLA 107

>ref|XP_142697.1| hypothetical protein XP_142697 [Mus musculus]
          Length = 579

 Score = 32.7 bits (73), Expect = 4.4
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 469 PLSFTLLSPDCTRPAAPLS--SLPSISRPARPHAAGSTLLSALAAACPLSS 323
           PLS  L  P    P  P S  + P+  RPA+P    S+L+++   A P+SS
Sbjct: 395 PLSLALRRPTTVYPVQPHSHSAQPTTLRPAQPPPVSSSLIASAKPAPPISS 445

>ref|XP_070909.2| hypothetical protein XP_070909 [Homo sapiens]
          Length = 151

 Score = 32.7 bits (73), Expect = 4.4
 Identities = 29/94 (30%), Positives = 44/94 (45%), Gaps = 17/94 (18%)
 Frame = -3

Query: 517 VHASTSRELTTVIPVLPLSFTLLSPD-CTRPAAPLSSLPSI---------------SRPA 386
           V  ++S  +T+ +P LP+S  L  P  C  PA+P+S LP +               +R  
Sbjct: 2   VGLASSPGMTSTVPALPISRGLRVPSSCGVPASPVSHLPRVRRSLMALCVWRRPRSARVP 61

Query: 385 RPHAAGST-LLSALAAACPLSSIKASGIMRPS*C 287
            P +AG+T    A +AAC     +A+   RP  C
Sbjct: 62  PPRSAGTTRRQGACSAACRWPFARAT--PRPGCC 93



EST assemble image


clone accession position
1 CL32c01_r AV394825 1 499
2 LCL091a02_r AV631255 124 621




Chlamydomonas reinhardtii
Kazusa DNA Research Institute