KCC000467A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000467A_C01 KCC000467A_c01
GCTCATCGAACTCGTGATAACCTCAACAGAACCGCAACAACTTGGGAAAAGAAAGCGGAC
ACTAAGCCAGAGAGTCTTAGAGACCCGCGACAATGTCGCCCTGACGGGCATGAGTAGCAT
TGATTGAATATGGACACAGCAACCATGACGCAATCAATGGGCGGGGCAGCGGCAGGGGCG
ACGGTCGAGCTAGAAAAGCTCATTGCGCTCTTCACCGGCCCAAATTCAGCGGACCTGTAT
GATAGGCATGTTGCAGCGATGCAGCGGTTATGTAGGAACAATGCGGCAGGCTTCGCCATC
CGCGACCTGCCGAAGGTCCAGCAGGTGCTGGAGCTCTCTGTGGCACTGCTCAAGCGTGGC
AGCACAGGCTTTGTGGAGCCCCTTTGTGAGCTCGTCGGCACCTTTTCCAAGCCATTCATC
CGGCGAACAGCCACGGATGAATTCAAAATGCTCAACCACATCACGAGCCTGCTGATGACC
GTCGGCGACATCTTCCGGTCACCAGGCATGCCGACGCAGATCGTGGCGGTGGCAGCGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000467A_C01 KCC000467A_c01
         (539 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH36351.1| FLJ21062 protein [Homo sapiens]                         41  0.012
dbj|BAC30334.1| unnamed protein product [Mus musculus]                 39  0.034
dbj|BAC26507.1| unnamed protein product [Mus musculus]                 39  0.034
ref|NP_766035.1| RIKEN cDNA A330021E22 [Mus musculus] gi|2633319...    39  0.034
gb|AAQ56720.1| unknown [Homo sapiens]                                  39  0.057

>gb|AAH36351.1| FLJ21062 protein [Homo sapiens]
          Length = 229

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 22/113 (19%), Positives = 54/113 (47%)
 Frame = +1

Query: 184 VELEKLIALFTGPNSADLYDRHVAAMQRLCRNNAAGFAIRDLPKVQQVLELSVALLKRGS 363
           ++L ++I L    +   L ++ +  +++L +    G  +RDL ++ ++L L    +K   
Sbjct: 46  MDLNRVIKLLEETDKDGLEEKQLKFVKKLVQCYQNGLPLRDLAQIFKILNLCSGKIKN-Q 104

Query: 364 TGFVEPLCELVGTFSKPFIRRTATDEFKMLNHITSLLMTVGDIFRSPGMPTQI 522
             F+E   +++     PF+++  +DE        + +  +GD+ + P    +I
Sbjct: 105 PRFIESAYDIIKLCGLPFLKKKVSDEITYAEDTANSIALLGDLMKIPSSELRI 157

>dbj|BAC30334.1| unnamed protein product [Mus musculus]
          Length = 576

 Score = 39.3 bits (90), Expect = 0.034
 Identities = 21/113 (18%), Positives = 54/113 (47%)
 Frame = +1

Query: 184 VELEKLIALFTGPNSADLYDRHVAAMQRLCRNNAAGFAIRDLPKVQQVLELSVALLKRGS 363
           ++L ++I +    +     ++ +  +++L      GF +RDL ++ ++L L    +++  
Sbjct: 47  MDLNRIIKVLEEEDKDVSEEKQLNYIKKLIHCYQNGFPLRDLAQIFKILSLCAEKIEKQP 106

Query: 364 TGFVEPLCELVGTFSKPFIRRTATDEFKMLNHITSLLMTVGDIFRSPGMPTQI 522
             FVEP  +++     PF+++  +DE        +    +G++ + P    +I
Sbjct: 107 C-FVEPASDIIKLCGLPFLKKKVSDEITYTEDTANSFALLGELMKIPSSALRI 158

>dbj|BAC26507.1| unnamed protein product [Mus musculus]
          Length = 627

 Score = 39.3 bits (90), Expect = 0.034
 Identities = 21/113 (18%), Positives = 54/113 (47%)
 Frame = +1

Query: 184 VELEKLIALFTGPNSADLYDRHVAAMQRLCRNNAAGFAIRDLPKVQQVLELSVALLKRGS 363
           ++L ++I +    +     ++ +  +++L      GF +RDL ++ ++L L    +++  
Sbjct: 47  MDLNRIIKVLEEEDKDVSEEKQLNYIKKLIHCYQNGFPLRDLAQIFKILSLCAEKIEKQP 106

Query: 364 TGFVEPLCELVGTFSKPFIRRTATDEFKMLNHITSLLMTVGDIFRSPGMPTQI 522
             FVEP  +++     PF+++  +DE        +    +G++ + P    +I
Sbjct: 107 C-FVEPASDIIKLCGLPFLKKKVSDEITYTEDTANSFALLGELMKIPSSALRI 158

>ref|NP_766035.1| RIKEN cDNA A330021E22 [Mus musculus] gi|26333195|dbj|BAC30315.1|
           unnamed protein product [Mus musculus]
           gi|26345696|dbj|BAC36499.1| unnamed protein product [Mus
           musculus]
          Length = 942

 Score = 39.3 bits (90), Expect = 0.034
 Identities = 21/113 (18%), Positives = 54/113 (47%)
 Frame = +1

Query: 184 VELEKLIALFTGPNSADLYDRHVAAMQRLCRNNAAGFAIRDLPKVQQVLELSVALLKRGS 363
           ++L ++I +    +     ++ +  +++L      GF +RDL ++ ++L L    +++  
Sbjct: 47  MDLNRIIKVLEEEDKDVSEEKQLNYIKKLIHCYQNGFPLRDLAQIFKILSLCAEKIEKQP 106

Query: 364 TGFVEPLCELVGTFSKPFIRRTATDEFKMLNHITSLLMTVGDIFRSPGMPTQI 522
             FVEP  +++     PF+++  +DE        +    +G++ + P    +I
Sbjct: 107 C-FVEPASDIIKLCGLPFLKKKVSDEITYTEDTANSFALLGELMKIPSSALRI 158

>gb|AAQ56720.1| unknown [Homo sapiens]
          Length = 227

 Score = 38.5 bits (88), Expect = 0.057
 Identities = 23/113 (20%), Positives = 54/113 (47%)
 Frame = +1

Query: 184 VELEKLIALFTGPNSADLYDRHVAAMQRLCRNNAAGFAIRDLPKVQQVLELSVALLKRGS 363
           ++L ++I L    +   L ++ +  +++L +    G  +RDL ++ ++L L    +K   
Sbjct: 46  MDLNRVIKLLEETDKDGLEEKQLKFVKKLVQCYQNGLPLRDLAQIFKILNLCSGKIKN-Q 104

Query: 364 TGFVEPLCELVGTFSKPFIRRTATDEFKMLNHITSLLMTVGDIFRSPGMPTQI 522
             F+E   +++     PF++R  +DE        + +  +GD+ + P    +I
Sbjct: 105 PRFIESAYDIIKLL--PFLKRKVSDEITYAEDTANSIALLGDLMKIPSSELRI 155



EST assemble image


clone accession position
1 CL58e10_r AV396242 1 592
2 CL74a03_r AV396481 113 496
3 CL31h11_r AV395035 124 517
4 CL58b03_r AV396192 142 630




Chlamydomonas reinhardtii
Kazusa DNA Research Institute