Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000420A_C01 KCC000420A_c01
(566 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC36180.1| 65 kDa heat shock protein [Mycobacterium terrae] 43 0.003
emb|CAC35959.1| type II 65 kDa heat shock protein [Mycobacterium... 42 0.004
ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty ... 42 0.006
gb|AAH36187.1| SRRM1 protein [Homo sapiens] 42 0.006
ref|XP_293372.2| similar to Ser/Arg-related nuclear matrix prote... 39 0.038
>emb|CAC36180.1| 65 kDa heat shock protein [Mycobacterium terrae]
Length = 146
Score = 43.1 bits (100), Expect = 0.003
Identities = 41/120 (34%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Frame = +3
Query: 195 PSRRKMAP*SPTPSQSIPQPSPRS-KSRWEPSSASFQVPTLTSSPPSMSTSRLRAHTRRD 371
PS K +P PT S P P RW + + P T P S ++ R + R
Sbjct: 22 PSWSKRSPRRPTMSPVTAPPRPPCWHRRWSRKACATWPPAPTRWPXSAASRRPSRRSPRP 81
Query: 372 CS*RPRLCRRPAPRPTATAVAMRSHTTPSWMRSSRLWKRRTTWVASSES*QPRLTPTACT 551
C PR RP R + R+ T+PS S R W R T V SS S P TP+AC+
Sbjct: 82 CXRTPRR-SRPRSRSRLPPGSPRA-TSPSVTXSPRRWTRSATKV-SSPSRSP--TPSACS 136
Score = 38.1 bits (87), Expect = 0.084
Identities = 27/77 (35%), Positives = 36/77 (46%)
Frame = +3
Query: 183 SGRRPSRRKMAP*SPTPSQSIPQPSPRSKSRWEPSSASFQVPTLTSSPPSMSTSRLRAHT 362
+ RRPSRR P TP +S PRS+SR P S P++T SP + S + +
Sbjct: 70 ASRRPSRRSPRPCXRTPRRS----RPRSRSRLPPGSPRATSPSVTXSPRRWTRSATKV-S 124
Query: 363 RRDCS*RPRLCRRPAPR 413
S P C +PR
Sbjct: 125 SPSRSPTPSACSWSSPR 141
>emb|CAC35959.1| type II 65 kDa heat shock protein [Mycobacterium abscessus]
Length = 146
Score = 42.4 bits (98), Expect = 0.004
Identities = 41/121 (33%), Positives = 50/121 (40%), Gaps = 4/121 (3%)
Frame = +3
Query: 216 P*SPTPSQ-SIPQPSPRSKSRWEPSSASFQVPTLTSSPPSMSTSRLRAHTRRDCS*RPRL 392
P PT S+ + P P P S W P T S S + R + R C PR
Sbjct: 29 PRRPTTSRVTAPPPPPCSPRLWSRKVCVTSPPAPTRSAXSAVSRRPSRRSPRRCXRAPRR 88
Query: 393 CR---RPAPRPTATAVAMRSHTTPSWMRSSRLWKRRTTWVASSES*QPRLTPTACTGLRM 563
R R PRP + T+PS S R W R T V SS S P TP+AC+ +
Sbjct: 89 SRPRSRSRPRPVSPRA-----TSPSATXSPRPWTRLVTRV-SSPSRSP--TPSACSWISP 140
Query: 564 R 566
R
Sbjct: 141 R 141
>ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty of prolines 101-l;
Ser/Arg-related nuclear matrix protein (plenty of
prolines 101-like) [Homo sapiens]
gi|3005587|gb|AAC09321.1| Ser/Arg-related nuclear matrix
protein [Homo sapiens]
gi|33150824|gb|AAP97290.1|AF419855_1 Ser/Arg-related
nuclear matrix protein [Homo sapiens]
Length = 820
Score = 42.0 bits (97), Expect = 0.006
Identities = 37/114 (32%), Positives = 48/114 (41%)
Frame = +3
Query: 168 RSRKQSGRRPSRRKMAP*SPTPSQSIPQPSPRSKSRWEPSSASFQVPTLTSSPPSMSTSR 347
R R S P RR+ P +P P + P P PR +S PS + P PS
Sbjct: 555 RRRSPSPAPPPRRRRTP-TPPPRRRTPSPPPRRRS---PSPRRYSPPIQRRYSPSPPPK- 609
Query: 348 LRAHTRRDCS*RPRLCRRPAPRPTATAVAMRSHTTPSWMRSSRLWKRRTTWVAS 509
RR S P RR +P P SH+ P RSS + KRR+ ++S
Sbjct: 610 -----RRTASPPPPPKRRASPSPPPKRRV--SHSPPPKQRSSPVTKRRSPSLSS 656
Score = 40.0 bits (92), Expect = 0.022
Identities = 40/138 (28%), Positives = 63/138 (44%), Gaps = 15/138 (10%)
Frame = +3
Query: 129 AQNPM*RRQAR*SRSRKQSG--RRPS-RRKMAP*SPTPSQSIPQPSPRSKSRWEPSSASF 299
+++P R R RS K RRPS RR+ +P TP + +P P +SR
Sbjct: 290 SRSPSHTRPRRRHRSDKMYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRR 349
Query: 300 QVPTLTSSPPSMSTSRLRAHTRRD---CS*RPRLCRRPAP---------RPTATAVAMRS 443
+L+ S S S+SR R+ ++ S PR RR +P RP+ A ++
Sbjct: 350 SSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPKT 409
Query: 444 HTTPSWMRSSRLWKRRTT 497
+P+ +S+R K R +
Sbjct: 410 RDSPTPQQSNRTRKSRVS 427
Score = 36.6 bits (83), Expect = 0.24
Identities = 26/102 (25%), Positives = 40/102 (38%), Gaps = 5/102 (4%)
Frame = +3
Query: 132 QNPM*RRQAR*SRSRKQSGRRPSRRKMAP*SPTPSQSIPQPSPRSKSRWEPSSASFQVPT 311
++P RR + + R P RR +P P ++ P P P+ + P P
Sbjct: 587 RSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPV 646
Query: 312 LTSSPPSMSTSRLRA-----HTRRDCS*RPRLCRRPAPRPTA 422
PS+S+ + TR S +P P+PRP A
Sbjct: 647 TKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRA 688
Score = 32.3 bits (72), Expect = 4.6
Identities = 31/108 (28%), Positives = 45/108 (40%), Gaps = 3/108 (2%)
Frame = +3
Query: 159 R*SRSRKQSGRRPSRRKMAP*---SPTPSQSIPQPSPRSKSRWEPSSASFQVPTLTSSPP 329
R RS ++G RR+ +P SP+P + + SPR + R PS PT P
Sbjct: 504 RPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPP----PTRRRRSP 559
Query: 330 SMSTSRLRAHTRRDCS*RPRLCRRPAPRPTATAVAMRSHTTPSWMRSS 473
S + R T P R P+P P + + R ++ P R S
Sbjct: 560 SPAPPPRRRRTPTP----PPRRRTPSPPPRRRSPSPRRYSPPIQRRYS 603
>gb|AAH36187.1| SRRM1 protein [Homo sapiens]
Length = 904
Score = 42.0 bits (97), Expect = 0.006
Identities = 37/114 (32%), Positives = 48/114 (41%)
Frame = +3
Query: 168 RSRKQSGRRPSRRKMAP*SPTPSQSIPQPSPRSKSRWEPSSASFQVPTLTSSPPSMSTSR 347
R R S P RR+ P +P P + P P PR +S PS + P PS
Sbjct: 557 RRRSPSPAPPPRRRRTP-TPPPRRRTPSPPPRRRS---PSPRRYSPPIQRRYSPSPPPK- 611
Query: 348 LRAHTRRDCS*RPRLCRRPAPRPTATAVAMRSHTTPSWMRSSRLWKRRTTWVAS 509
RR S P RR +P P SH+ P RSS + KRR+ ++S
Sbjct: 612 -----RRTASPPPPPKRRASPSPPPKRRV--SHSPPPKQRSSPVTKRRSPSLSS 658
Score = 37.4 bits (85), Expect = 0.14
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Frame = +3
Query: 129 AQNPM*RRQAR*SRSRKQS---GRRPS-RRKMAP*SPTPSQSIPQPSPRSKSRWEPSSAS 296
+++P R R RSR +S RRPS RR+ +P TP + +P P +SR
Sbjct: 290 SRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 349
Query: 297 FQVPTLTSSPPSMSTSRLRAHTRRD---CS*RPRLCRRPAP---------RPTATAV-AM 437
+L+ S S S+SR R+ ++ S PR RR +P RP+ A
Sbjct: 350 RSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPP 409
Query: 438 RSHTTPSWMRSSRLWKRRTT 497
++ +P+ +S+R K R +
Sbjct: 410 KTRHSPTPQQSNRTRKSRVS 429
Score = 36.6 bits (83), Expect = 0.24
Identities = 26/102 (25%), Positives = 40/102 (38%), Gaps = 5/102 (4%)
Frame = +3
Query: 132 QNPM*RRQAR*SRSRKQSGRRPSRRKMAP*SPTPSQSIPQPSPRSKSRWEPSSASFQVPT 311
++P RR + + R P RR +P P ++ P P P+ + P P
Sbjct: 589 RSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPV 648
Query: 312 LTSSPPSMSTSRLRA-----HTRRDCS*RPRLCRRPAPRPTA 422
PS+S+ + TR S +P P+PRP A
Sbjct: 649 TKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRA 690
Score = 32.3 bits (72), Expect = 4.6
Identities = 31/108 (28%), Positives = 45/108 (40%), Gaps = 3/108 (2%)
Frame = +3
Query: 159 R*SRSRKQSGRRPSRRKMAP*---SPTPSQSIPQPSPRSKSRWEPSSASFQVPTLTSSPP 329
R RS ++G RR+ +P SP+P + + SPR + R PS PT P
Sbjct: 506 RPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPP----PTRRRRSP 561
Query: 330 SMSTSRLRAHTRRDCS*RPRLCRRPAPRPTATAVAMRSHTTPSWMRSS 473
S + R T P R P+P P + + R ++ P R S
Sbjct: 562 SPAPPPRRRRTPTP----PPRRRTPSPPPRRRSPSPRRYSPPIQRRYS 605
>ref|XP_293372.2| similar to Ser/Arg-related nuclear matrix protein (plenty of
prolines 101-l; Ser/Arg-related nuclear matrix protein
(plenty of prolines 101-like) [Homo sapiens]
Length = 429
Score = 39.3 bits (90), Expect = 0.038
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Frame = +3
Query: 168 RSRKQSGRRPSRRK--MAP*SPTPSQSIPQPSPRSKSRWEPSSASFQVPTLTSSPPSMST 341
R R+ P+RR+ ++P P S P P PR ++ PS P S P
Sbjct: 294 RQRRTPSPPPTRRRWSLSPAPPPRGHSSPTPPPRKRTPSPPSHRCSPSPRRYSPPIQRRY 353
Query: 342 SRLRAHTRRDCS*RPRLCRRPAPRPTATAVAMRSHTTPSWMRSSRLWKRRTTWVAS 509
S RR S P +R P P SH+ P RSS + KRR+ ++S
Sbjct: 354 SPSPPPKRRMASSPPLPEQRALPSPPPKHWV--SHSPPPKQRSSSVTKRRSPSLSS 407
