Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000394A_C03 KCC000394A_c03
(647 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567151.1| 40S ribosomal protein S13 (RPS13B) [Arabidopsis... 155 8e-56
sp|Q05761|RS13_MAIZE 40S RIBOSOMAL PROTEIN S13 gi|419802|pir||S3... 162 1e-55
ref|NP_567104.1| 40S ribosomal protein S13 (RPS13A) [Arabidopsis... 155 1e-55
gb|AAK55664.1|AF378861_1 AT3g60770/T4C21_180 [Arabidopsis thalia... 155 5e-55
dbj|BAA96366.1| cytoplasmic ribosomal protein S13 [Panax ginseng] 152 3e-54
>ref|NP_567151.1| 40S ribosomal protein S13 (RPS13B) [Arabidopsis thaliana]
gi|27808638|sp|P59224|R13B_ARATH 40S ribosomal protein
S13-2 gi|6521012|dbj|BAA88058.1| cytoplasmic ribosomal
protein S13 [Arabidopsis thaliana]
gi|13877541|gb|AAK43848.1|AF370471_1 similar to
ribosomal protein S13 [Arabidopsis thaliana]
gi|15982874|gb|AAL09784.1| AT4g00100/F6N15_7
[Arabidopsis thaliana] gi|21593617|gb|AAM65584.1|
putative ribosomal protein S13 [Arabidopsis thaliana]
gi|30102866|gb|AAP21351.1| At4g00100 [Arabidopsis
thaliana]
Length = 151
Score = 155 bits (392), Expect(3) = 8e-56
Identities = 75/95 (78%), Positives = 85/95 (88%)
Frame = +3
Query: 189 STAVPLINTVTGSKVLRILKGAGLAPEIPEDLYFMIKKAVSIRKHLERNRKDKDGKFRLI 368
S +P + +VTGSK+LRILK GLAPEIPEDLY +IKKAV+IRKHLERNRKDKD KFRLI
Sbjct: 57 SHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLI 116
Query: 369 LVESRIHRLARYYKRVRKLPPNWKYESSTASTLVS 473
LVESRIHRLARYYK+ +KLPP WKYES+TASTLV+
Sbjct: 117 LVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
Score = 77.0 bits (188), Expect(3) = 8e-56
Identities = 33/47 (70%), Positives = 40/47 (84%)
Frame = +1
Query: 19 MGRMHSKGKGKASSAIPYKRSPPSWCKTTGAEVQEMICKFARKGMTP 159
MGRMHS+GKG ++SA+PYKRS PSW KTT +V E ICKFA+KG+TP
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTP 47
Score = 28.1 bits (61), Expect(3) = 8e-56
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = +2
Query: 158 PSQIGIVLRDQHG 196
PSQIG++LRD HG
Sbjct: 47 PSQIGVILRDSHG 59
>sp|Q05761|RS13_MAIZE 40S RIBOSOMAL PROTEIN S13 gi|419802|pir||S30146 ribosomal protein
S13, cytosolic - maize gi|288059|emb|CAA44311.1|
cytoplasmatic ribosomal protein S13 [Zea mays]
Length = 151
Score = 162 bits (409), Expect(3) = 1e-55
Identities = 77/92 (83%), Positives = 86/92 (92%)
Frame = +3
Query: 198 VPLINTVTGSKVLRILKGAGLAPEIPEDLYFMIKKAVSIRKHLERNRKDKDGKFRLILVE 377
+PL+ +VTGSK+LRILK GLAPEIPEDLYF+IKKAV+IRKHLERNRKDKD KFRLILVE
Sbjct: 60 IPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVE 119
Query: 378 SRIHRLARYYKRVRKLPPNWKYESSTASTLVS 473
SRIHRLARYYKR +KLPP WKYES+TASTLV+
Sbjct: 120 SRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
Score = 68.6 bits (166), Expect(3) = 1e-55
Identities = 29/47 (61%), Positives = 38/47 (80%)
Frame = +1
Query: 19 MGRMHSKGKGKASSAIPYKRSPPSWCKTTGAEVQEMICKFARKGMTP 159
MG MHS+GKG +SSA+PYKR+PP+W KT ++V+EMI K A+KG P
Sbjct: 1 MGAMHSRGKGISSSALPYKRTPPTWLKTAASDVEEMITKAAKKGQMP 47
Score = 29.3 bits (64), Expect(3) = 1e-55
Identities = 11/13 (84%), Positives = 13/13 (99%)
Frame = +2
Query: 158 PSQIGIVLRDQHG 196
PSQIG++LRDQHG
Sbjct: 47 PSQIGVLLRDQHG 59
>ref|NP_567104.1| 40S ribosomal protein S13 (RPS13A) [Arabidopsis thaliana]
gi|27808637|sp|P59223|R13A_ARATH 40S ribosomal protein
S13-1 gi|14190473|gb|AAK55717.1|AF380636_1
AT3g60770/T4C21_180 [Arabidopsis thaliana]
gi|15810101|gb|AAL06976.1| AT3g60770/T4C21_180
[Arabidopsis thaliana] gi|19699318|gb|AAL91269.1|
AT3g60770/T4C21_180 [Arabidopsis thaliana]
Length = 151
Score = 155 bits (392), Expect(3) = 1e-55
Identities = 75/95 (78%), Positives = 85/95 (88%)
Frame = +3
Query: 189 STAVPLINTVTGSKVLRILKGAGLAPEIPEDLYFMIKKAVSIRKHLERNRKDKDGKFRLI 368
S +P + +VTGSK+LRILK GLAPEIPEDLY +IKKAV+IRKHLERNRKDKD KFRLI
Sbjct: 57 SHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLI 116
Query: 369 LVESRIHRLARYYKRVRKLPPNWKYESSTASTLVS 473
LVESRIHRLARYYK+ +KLPP WKYES+TASTLV+
Sbjct: 117 LVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
Score = 76.3 bits (186), Expect(3) = 1e-55
Identities = 33/47 (70%), Positives = 40/47 (84%)
Frame = +1
Query: 19 MGRMHSKGKGKASSAIPYKRSPPSWCKTTGAEVQEMICKFARKGMTP 159
MGRMHS+GKG ++SA+PYKRS PSW KTT +V E ICKFA+KG+TP
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTP 47
Score = 28.1 bits (61), Expect(3) = 1e-55
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = +2
Query: 158 PSQIGIVLRDQHG 196
PSQIG++LRD HG
Sbjct: 47 PSQIGVILRDSHG 59
>gb|AAK55664.1|AF378861_1 AT3g60770/T4C21_180 [Arabidopsis thaliana]
gi|15450535|gb|AAK96445.1| AT3g60770/T4C21_180
[Arabidopsis thaliana]
Length = 151
Score = 155 bits (392), Expect(3) = 5e-55
Identities = 75/95 (78%), Positives = 85/95 (88%)
Frame = +3
Query: 189 STAVPLINTVTGSKVLRILKGAGLAPEIPEDLYFMIKKAVSIRKHLERNRKDKDGKFRLI 368
S +P + +VTGSK+LRILK GLAPEIPEDLY +IKKAV+IRKHLERNRKDKD KFRLI
Sbjct: 57 SHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLI 116
Query: 369 LVESRIHRLARYYKRVRKLPPNWKYESSTASTLVS 473
LVESRIHRLARYYK+ +KLPP WKYES+TASTLV+
Sbjct: 117 LVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
Score = 74.3 bits (181), Expect(3) = 5e-55
Identities = 32/47 (68%), Positives = 40/47 (85%)
Frame = +1
Query: 19 MGRMHSKGKGKASSAIPYKRSPPSWCKTTGAEVQEMICKFARKGMTP 159
MGRMHS+GKG ++SA+P+KRS PSW KTT +V E ICKFA+KG+TP
Sbjct: 1 MGRMHSRGKGISASALPHKRSSPSWLKTTPQDVDESICKFAKKGLTP 47
Score = 28.1 bits (61), Expect(3) = 5e-55
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = +2
Query: 158 PSQIGIVLRDQHG 196
PSQIG++LRD HG
Sbjct: 47 PSQIGVILRDSHG 59
>dbj|BAA96366.1| cytoplasmic ribosomal protein S13 [Panax ginseng]
Length = 151
Score = 152 bits (384), Expect(3) = 3e-54
Identities = 74/95 (77%), Positives = 84/95 (87%)
Frame = +3
Query: 189 STAVPLINTVTGSKVLRILKGAGLAPEIPEDLYFMIKKAVSIRKHLERNRKDKDGKFRLI 368
S + + +VTGSK+LRILK GLAPEIPEDLY +IKKAV+IRKHLERNRKDKD KFRLI
Sbjct: 57 SHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLI 116
Query: 369 LVESRIHRLARYYKRVRKLPPNWKYESSTASTLVS 473
LVESRIHRLARYYK+ +KLPP WKYES+TASTLV+
Sbjct: 117 LVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
Score = 74.3 bits (181), Expect(3) = 3e-54
Identities = 31/47 (65%), Positives = 40/47 (84%)
Frame = +1
Query: 19 MGRMHSKGKGKASSAIPYKRSPPSWCKTTGAEVQEMICKFARKGMTP 159
MGRMHS+GKG ++SA+PYKR+PPSW K T +V + ICKFA+KG+TP
Sbjct: 1 MGRMHSRGKGISASALPYKRTPPSWLKITPQDVDDNICKFAKKGLTP 47
Score = 28.5 bits (62), Expect(3) = 3e-54
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 158 PSQIGIVLRDQHGRA 202
PSQIG++LRD HG A
Sbjct: 47 PSQIGVILRDSHGIA 61
