KCC000393A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000393A_C01 KCC000393A_c01
gaGAGATACTATACGTTGCGATTTCTATTAATCAAAGTCATAGACGCAAAGCCCACTCGA
CGCGAACTCGCGCTGAGCCTTTCCATTTGTCTTCCATTCAATTACCTAAATATAATGCCT
GATTTAGCAATGTATTGGTTACATATCTAACCTTGGCTATACAACAGCCGCAAAAACACG
ACGCCAGCGGCAAATGGCTCTCTCAGGTTGCGACGCGCCAGAGGACTGCGACTCGCATGC
TTCCTTCTGGCGTCATCGATGCTTCAGTGGGGCCGTCGTCGCCACGTTTGGCCTCTACAA
CGCAGTCTTCACCACTGCCGAACAGCCCCAACCCTACGGGACGGCGCAAGAGCGGGTGCT
TACCACTCTCCGCTTCTGATGCGGTCTCAGGCGCCAGCGACGACGCAGCCGCAGGCGGCG
AGGCTTGCTACGGCGGGGCTGACTCCTCGCCGCCCCACGTGCTGTCAGTGCCGCTCACGC
TGCTCAGTCTACACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000393A_C01 KCC000393A_c01
         (495 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_293580.2| similar to orphan seven transmembrane receptor ...    40  0.021
gb|AAO85046.1| G protein-coupled receptor PGR10 [Homo sapiens]         40  0.021
gb|AAF82559.1|AF261761_2 putative capsid protein; pORF1 [TT virus]     28  0.18
ref|ZP_00067454.1| COG2730: Endoglucanase [Microbulbifer degrada...    36  0.23
ref|NP_596690.1| hypothetical serine-rich secreted protein [Schi...    35  0.51

>ref|XP_293580.2| similar to orphan seven transmembrane receptor [Homo sapiens]
          Length = 731

 Score = 39.7 bits (91), Expect = 0.021
 Identities = 22/52 (42%), Positives = 27/52 (51%)
 Frame = +3

Query: 273 PSSPRLASTTQSSPLPNSPNPTGRRKSGCLPLSASDAVSGASDDAAAGGEAC 428
           P +P  A    S    ++P P+ RR  GC P  +SD V G    AAAG EAC
Sbjct: 239 PGTPPTAGRVVSLSPEDAPGPSLRRSGGCSP--SSDTVFGPGAPAAAGAEAC 288

>gb|AAO85046.1| G protein-coupled receptor PGR10 [Homo sapiens]
          Length = 434

 Score = 39.7 bits (91), Expect = 0.021
 Identities = 22/52 (42%), Positives = 27/52 (51%)
 Frame = +3

Query: 273 PSSPRLASTTQSSPLPNSPNPTGRRKSGCLPLSASDAVSGASDDAAAGGEAC 428
           P +P  A    S    ++P P+ RR  GC P  +SD V G    AAAG EAC
Sbjct: 84  PGTPPTAGRVVSLSPEDAPGPSLRRSGGCSP--SSDTVFGPGAPAAAGAEAC 133

>gb|AAF82559.1|AF261761_2 putative capsid protein; pORF1 [TT virus]
          Length = 766

 Score = 28.1 bits (61), Expect(2) = 0.18
 Identities = 14/27 (51%), Positives = 18/27 (65%)
 Frame = -2

Query: 347 APSRRVGAVRQW*RLRCRGQTWRRRPH 267
           A +RR G VR+W   R RG+ WRRR +
Sbjct: 34  ARTRRRGRVRRW---RRRGRGWRRRTY 57

 Score = 27.3 bits (59), Expect(2) = 0.18
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 435 RRSKPRRLRLRRRWRLRPHQKRRVVSTR 352
           RR  PRR R   R R RP ++RR   TR
Sbjct: 10  RRRWPRRRRTTWRRRPRPRRRRRTARTR 37

>ref|ZP_00067454.1| COG2730: Endoglucanase [Microbulbifer degradans 2-40]
          Length = 451

 Score = 36.2 bits (82), Expect = 0.23
 Identities = 20/70 (28%), Positives = 37/70 (52%)
 Frame = +3

Query: 246 SGVIDASVGPSSPRLASTTQSSPLPNSPNPTGRRKSGCLPLSASDAVSGASDDAAAGGEA 425
           SG  D+    +S   +S++ SS   +S + +    S     S+S + S +S  +++GGEA
Sbjct: 20  SGASDSPQASNSSSGSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSSSSSSSSSSSGGEA 79

Query: 426 CYGGADSSPP 455
            Y   +++PP
Sbjct: 80  LYPSYNTNPP 89

>ref|NP_596690.1| hypothetical serine-rich secreted protein [Schizosaccharomyces
           pombe] gi|7493381|pir||T39903 serine-rich protein -
           fission yeast (Schizosaccharomyces pombe)
           gi|3873550|emb|CAA22127.1| SPBC215.13
           [Schizosaccharomyces pombe]
          Length = 534

 Score = 35.0 bits (79), Expect = 0.51
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +3

Query: 165 QPQKHDASGKWLSQVATRQRTATRMLPSGVIDASVGPSSPRLASTTQSSPLPNS-PNPTG 341
           QP     S    S  A    +++ +  S V+ +S  PSS   ++ T SS   +S P+ + 
Sbjct: 186 QPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSS 245

Query: 342 RRKSGCLPLSASDAVSGASDDAAAGGEACYGGADSSPP 455
              S    LS+S + S AS  +++        + SS P
Sbjct: 246 SSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSP 283



EST assemble image


clone accession position
1 HCL074e09_r AV643707 1 441
2 LCL015g04_r AV626805 3 354
3 LCL028a12_r AV627528 5 495
4 LCL083e07_r AV630738 8 442
5 HCL041b03_r AV641836 15 467
6 CL24h02_r AV394448 202 311




Chlamydomonas reinhardtii
Kazusa DNA Research Institute