KCC000372A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000372A_C01 KCC000372A_c01
cgaGACAGATTTCTTTTGCATGGATTATCCAGCAGCACAGCGGAAGCACACCCCGGTCCC
TCCCTACCCATCCGGCATTTATCCCTACCGGTCCTAAAAATCCTGACGATACCACCAAGG
AGGAAATGTCGAAGCCAACGTGTCCTCTCACTCATGCACTCCAGCGTCCCGCTCTCCCGA
GCTGCTCCGCCCCAAAAACCTTGTGCCGAAGCCGCGGCAGGACAAGAATGCGCAGCGAAT
GCTCGACACGCCAACGCAAGCCTAGACACTGAAGAACAGGCGAAAATCCAACTGAATCCT
GAGAGCACGTCGCCCAACATTACCAACACTCCATTTCCGCTTGACCATGGCAACAGCCCC
AGTTCTGGCGCTGCCACTGCATGGGCACGCCGCCCATGCAGCATCACCACGCCCTCACGT
CCTCGGCACAGCCTCTTCTGCGATTGAACCTCAAACAACGTTGTACTAAGCCGTACCCGG
CAACACACTCCTCCTGCGCCTGCGGGGACCATCGCACTGACTATCCCTGCCACACACAGT
CACCCCtgcacacgccaccgtcgggtatcgtgatttgttcttgctgtcaaaacggggaac
caccccccgtcgttgctcaatctctc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000372A_C01 KCC000372A_c01
         (626 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO44918.2| Protein kinase protein 25, isoform b [Caenorhabdi...    41  0.016
ref|NP_872245.1| protein kinase 25 family member (kin-25) [Caeno...    41  0.016
ref|NP_872246.1| protein kinase 25 family member (kin-25) [Caeno...    41  0.016
ref|NP_510784.1| protein kinase and SH3 domain containing protei...    41  0.016
ref|NP_510783.1| protein kinase 25 family member (kin-25) [Caeno...    41  0.016

>gb|AAO44918.2| Protein kinase protein 25, isoform b [Caenorhabditis elegans]
          Length = 1130

 Score = 40.8 bits (94), Expect = 0.016
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
 Frame = +1

Query: 19   HGLSSSTAEAHPGPSLPIRHLSLPVLKILTIPPRRKCRSQRVLSLMHSSVPLSRAAPPQK 198
            +G ++  A+  P    PI   S+P L+     P+     Q+ +      +P S  AP QK
Sbjct: 682  NGFNAPRADVAPVQQRPISSASIPALQ-----PQPIQHIQKPIQPQQVRIPPS-TAPVQK 735

Query: 199  PCAEAAAGQECAANARHANASLDTEEQAKIQLNPESTSPNITNTPF---PLDHGNSPSSG 369
            P   +A      A    + AS D          P  TSP ++NTP    P+    + S+ 
Sbjct: 736  PVQVSAPTHSNVAPTTSSQASADARNPL-----PPKTSPPVSNTPITVAPVHAAPTTSAP 790

Query: 370  AATAWARRPCSIT 408
            + +   RRP S T
Sbjct: 791  STSVVTRRPTSTT 803

>ref|NP_872245.1| protein kinase 25 family member (kin-25) [Caenorhabditis elegans]
            gi|28476841|gb|AAO44917.1| Protein kinase protein 25,
            isoform a [Caenorhabditis elegans]
          Length = 1237

 Score = 40.8 bits (94), Expect = 0.016
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
 Frame = +1

Query: 19   HGLSSSTAEAHPGPSLPIRHLSLPVLKILTIPPRRKCRSQRVLSLMHSSVPLSRAAPPQK 198
            +G ++  A+  P    PI   S+P L+     P+     Q+ +      +P S  AP QK
Sbjct: 789  NGFNAPRADVAPVQQRPISSASIPALQ-----PQPIQHIQKPIQPQQVRIPPS-TAPVQK 842

Query: 199  PCAEAAAGQECAANARHANASLDTEEQAKIQLNPESTSPNITNTPF---PLDHGNSPSSG 369
            P   +A      A    + AS D          P  TSP ++NTP    P+    + S+ 
Sbjct: 843  PVQVSAPTHSNVAPTTSSQASADARNPL-----PPKTSPPVSNTPITVAPVHAAPTTSAP 897

Query: 370  AATAWARRPCSIT 408
            + +   RRP S T
Sbjct: 898  STSVVTRRPTSTT 910

>ref|NP_872246.1| protein kinase 25 family member (kin-25) [Caenorhabditis elegans]
          Length = 703

 Score = 40.8 bits (94), Expect = 0.016
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
 Frame = +1

Query: 19  HGLSSSTAEAHPGPSLPIRHLSLPVLKILTIPPRRKCRSQRVLSLMHSSVPLSRAAPPQK 198
           +G ++  A+  P    PI   S+P L+     P+     Q+ +      +P S  AP QK
Sbjct: 255 NGFNAPRADVAPVQQRPISSASIPALQ-----PQPIQHIQKPIQPQQVRIPPS-TAPVQK 308

Query: 199 PCAEAAAGQECAANARHANASLDTEEQAKIQLNPESTSPNITNTPF---PLDHGNSPSSG 369
           P   +A      A    + AS D          P  TSP ++NTP    P+    + S+ 
Sbjct: 309 PVQVSAPTHSNVAPTTSSQASADARNPL-----PPKTSPPVSNTPITVAPVHAAPTTSAP 363

Query: 370 AATAWARRPCSIT 408
           + +   RRP S T
Sbjct: 364 STSVVTRRPTSTT 376

>ref|NP_510784.1| protein kinase and SH3 domain containing protein family member
            (kin-25) [Caenorhabditis elegans]
          Length = 1116

 Score = 40.8 bits (94), Expect = 0.016
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
 Frame = +1

Query: 19   HGLSSSTAEAHPGPSLPIRHLSLPVLKILTIPPRRKCRSQRVLSLMHSSVPLSRAAPPQK 198
            +G ++  A+  P    PI   S+P L+     P+     Q+ +      +P S  AP QK
Sbjct: 668  NGFNAPRADVAPVQQRPISSASIPALQ-----PQPIQHIQKPIQPQQVRIPPS-TAPVQK 721

Query: 199  PCAEAAAGQECAANARHANASLDTEEQAKIQLNPESTSPNITNTPF---PLDHGNSPSSG 369
            P   +A      A    + AS D          P  TSP ++NTP    P+    + S+ 
Sbjct: 722  PVQVSAPTHSNVAPTTSSQASADARNPL-----PPKTSPPVSNTPITVAPVHAAPTTSAP 776

Query: 370  AATAWARRPCSIT 408
            + +   RRP S T
Sbjct: 777  STSVVTRRPTSTT 789

>ref|NP_510783.1| protein kinase 25 family member (kin-25) [Caenorhabditis elegans]
            gi|2499674|sp|Q10925|KI25_CAEEL Probable tyrosine-protein
            kinase kin-25 gi|7494838|pir||T15316 hypothetical protein
            B0302.1 - Caenorhabditis elegans
          Length = 1223

 Score = 40.8 bits (94), Expect = 0.016
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
 Frame = +1

Query: 19   HGLSSSTAEAHPGPSLPIRHLSLPVLKILTIPPRRKCRSQRVLSLMHSSVPLSRAAPPQK 198
            +G ++  A+  P    PI   S+P L+     P+     Q+ +      +P S  AP QK
Sbjct: 775  NGFNAPRADVAPVQQRPISSASIPALQ-----PQPIQHIQKPIQPQQVRIPPS-TAPVQK 828

Query: 199  PCAEAAAGQECAANARHANASLDTEEQAKIQLNPESTSPNITNTPF---PLDHGNSPSSG 369
            P   +A      A    + AS D          P  TSP ++NTP    P+    + S+ 
Sbjct: 829  PVQVSAPTHSNVAPTTSSQASADARNPL-----PPKTSPPVSNTPITVAPVHAAPTTSAP 883

Query: 370  AATAWARRPCSIT 408
            + +   RRP S T
Sbjct: 884  STSVVTRRPTSTT 896



EST assemble image


clone accession position
1 HC043e11_r AV635226 1 479
2 HC052g02_r AV635923 21 458
3 HC085b07_r AV638340 48 492
4 MX041b02_r BP087673 49 377
5 CL26f01_r AV394601 49 563
6 MXL066f05_r BP096893 50 284
7 HC033f01_r AV634454 51 441
8 HC009c05_r AV632521 51 318
9 MXL059d05_r BP096479 52 326
10 HCL054c06_r AV642585 60 493
11 CL22h12_r AV394258 128 547
12 MXL044e12_r BP095611 195 675
13 CM036c11_r AV388764 286 569




Chlamydomonas reinhardtii
Kazusa DNA Research Institute