KCC000365A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000365A_C01 KCC000365A_c01
cgaggcaacgacagaaGAAGTGTTGCAACTGTGTGCATATACTTATATCTAGCATTCTTT
GAGTTCACTAACGTGTTTGTGAAACAGCACCGACACACGTCTTCGCGCCCTGCTTTCCGT
TTTGATGTTTACGTGTTAAGCACCACAGAACATGAGTACATCGGCATTCCTGCTTACGCC
GCGGGTGTCTGCAAATGGCGAGCCGGTTCCGCTGCTGGTGGCCAAGACGCACCCAGTGTC
CGCTGAGGAGGATGCCCACTCTGACTCGTGTACAGAGAGCTCTGTGCGCTCCGAGCCGAG
GCTGAGTCTGGACCTGGACGCCAAGGCGCTCGGGGTCCCCGGCGGCATTCCACGCCTTCC
CGACTACGCGATTCCGCTGCAGCCCAAGCTGCTTAAGCAAATCAATTCGATGCACAGCAA
GGAGGAGCTGCTTGCGTTTGTGGGACAGTGCTACATCATCCTGGACCCGATCAACCTGGT
GACGTGCGTGTACAGGCTGGCACGAATGTTCACAGGCATCCGCCATCCAGAGTCGCGCCA
GGCGTGGAAAACGGAGCTGTCGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000365A_C01 KCC000365A_c01
         (564 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_303291.1| hypothetical protein XP_303291 [Homo sapiens]         38  0.11
ref|XP_320719.1| ENSANGP00000020181 [Anopheles gambiae] gi|30174...    37  0.24
gb|AAL78892.1|AF435463_1 centromeric histone Cid [Drosophila mal...    35  0.54
dbj|BAB32536.1| alpha-amylase [Drosophila melanogaster]                35  0.54
ref|XP_196224.1| hypothetical protein XP_196224 [Mus musculus]         35  0.70

>ref|XP_303291.1| hypothetical protein XP_303291 [Homo sapiens]
          Length = 219

 Score = 37.7 bits (86), Expect = 0.11
 Identities = 22/56 (39%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
 Frame = -2

Query: 359 EGVECRRGPRAPWRPGPDSASA---RSAQSSLYTSQSGHPPQRTLGASWPPAAEPA 201
           E  +C  G R    PGP  +     RSA + LYT+  G P +   GA  PP+A PA
Sbjct: 4   EAADCCPGARLAAAPGPPVSPPCLPRSAPNPLYTAGCGLPGRAVAGAPGPPSAPPA 59

>ref|XP_320719.1| ENSANGP00000020181 [Anopheles gambiae] gi|30174160|gb|EAA00415.2|
           ENSANGP00000020181 [Anopheles gambiae str. PEST]
          Length = 340

 Score = 36.6 bits (83), Expect = 0.24
 Identities = 37/105 (35%), Positives = 48/105 (45%)
 Frame = +3

Query: 240 PLRRMPTLTRVQRALCAPSRG*VWTWTPRRSGSPAAFHAFPTTRFRCSPSCLSKSIRCTA 419
           P     T  R +R  CAPS          R  SP++  A  T+R RC PS   ++    A
Sbjct: 11  PRTASSTTARARRTRCAPSACRSCRCARSRWSSPSS--ARTTSRARCRPS---RTATGRA 65

Query: 420 RRSCLRLWDSATSSWTRSTW*RACTGWHECSQASAIQSRARRGKR 554
           RRS LR   S++S+  RST  R C G      A+    R RR +R
Sbjct: 66  RRS-LR---SSSSTAVRSTSGRRCCGRPRSPSATRATLRHRRTRR 106

>gb|AAL78892.1|AF435463_1 centromeric histone Cid [Drosophila malerkotliana]
          Length = 292

 Score = 35.4 bits (80), Expect = 0.54
 Identities = 28/77 (36%), Positives = 37/77 (47%), Gaps = 5/77 (6%)
 Frame = -2

Query: 392 AAWAAAESRSREGVECRRGPRAPWR-PGPDSASARSAQSSLYTSQSGHPPQRTLGASWP- 219
           AA ++ ES + +    R GP++P R P   S   RSA  S     +   PQR   A  P 
Sbjct: 110 AAESSQESSAAQSPRRRPGPQSPQRRPAAQSPQRRSAAQSPQRRAAAQSPQRRPAAQSPQ 169

Query: 218 --PAAE-PARHLQTPAA 177
             PAA+ P R+ QT  A
Sbjct: 170 RRPAAQPPQRNAQTSGA 186

>dbj|BAB32536.1| alpha-amylase [Drosophila melanogaster]
          Length = 195

 Score = 35.4 bits (80), Expect = 0.54
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = -2

Query: 323 WRPGPDSASARSAQSSLYTSQSGHPPQRTLGASWPPAAEPARHLQTPAA*AGMPMYSC 150
           WRP P++ S+  A SS  T     P       +WPP   P      P A A   +  C
Sbjct: 88  WRPAPETRSSSPAWSSAATPSECAPTWTWSSTTWPPTEAPTALAAAPPAPAARAIPEC 145

>ref|XP_196224.1| hypothetical protein XP_196224 [Mus musculus]
          Length = 135

 Score = 35.0 bits (79), Expect = 0.70
 Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
 Frame = -2

Query: 347 CRRGPRAPWRPGPDSASARSAQSSLYTS-----QSGHPPQRTLGASWP---PAAEPARHL 192
           C R PRA +R G   A       S+  S      SG PPQR L +SW    P  E    +
Sbjct: 31  CLRWPRAAYRTGSPQACTSVKTPSVAHSCRTRVSSGPPPQRKLPSSWTPPLPRGEATNRI 90

Query: 191 QTPAA*AGMPMYSCSVVLNT*TSKRKAGRE---DVCRCCFTNT 72
            T       P+ S S   +T T  R+AGR    +V   C ++T
Sbjct: 91  VTRMT-TATPICS-SPCTSTSTGWRRAGRVECLEVEAACISST 131



EST assemble image


clone accession position
1 HCL095c11_r AV644902 1 516
2 HCL034d06_r AV641481 17 546
3 CL22d05_r AV394242 58 565




Chlamydomonas reinhardtii
Kazusa DNA Research Institute