KCC000351A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000351A_C01 KCC000351A_c01
tgctacttgacttgtgcttgccactgctttcggcGCAACCAAAAGAGCCCTCGCGCCGTT
CCGTTGGCTGGCCAAAGAACTTGCACCGGTACTTATTTGCTGCTCACTTCAAGTCAGGAG
CATACATGTAGCTTGCAAGCGCTGTATTGTCGGCACAAACAGTGCTGACGCAGAGCTGGG
ACGTTTACGTGCTGCCCATTTTCCCTCGATTTTCAGGGGTTTACATCTCAGTCTAATAGA
AAAACACCTAAATCTTCATATTCAAGCGAACGGCTAACGCAAGCGTGCTCCGGGGGCTCC
GGGCTGGGGTGCCATGCGGGCTCTTTGCTCGCAAAGGGCGCACAGTCTGCTTGCGGTAGC
TCTTGTGCGGAATGGACCACGTAGCGCATCCGAGGACGCGCTGGCTGCCTCCGGCTCGGT
GCTGGGAGGCTCTAACACAAGTGCCGCTTGCGGGTTGTGGGGCGTCTGGGGGCGGAGCGG
CCTCTTCGCACGCCACCGCAGCGCAGGAGCTTCAGCGGAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000351A_C01 KCC000351A_c01
         (520 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_351553.1| hypothetical protein XP_351552 [Homo sapiens]         37  0.12
ref|XP_300858.1| hypothetical protein XP_300858 [Homo sapiens] g...    37  0.12
ref|NP_851896.1| very large tegument protein [Cercopithecine her...    37  0.12
ref|ZP_00057769.1| COG3599: Cell division initiation protein [Th...    36  0.26
gb|AAK53824.1|AC011806_1 Putative protein with region similar to...    36  0.26

>ref|XP_351553.1| hypothetical protein XP_351552 [Homo sapiens]
          Length = 287

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 24/68 (35%), Positives = 30/68 (43%), Gaps = 2/68 (2%)
 Frame = -3

Query: 428 LPAPSRRQPARPRMRYVVHSAQELPQADCAPFASKEPAWHPSPEPPEHACVS--RSLEYE 255
           LP   R  P+   +R    S   LP    AP AS  P  HP P+    AC+   + LE E
Sbjct: 111 LPVSQRPAPSAQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQGLEAE 170

Query: 254 DLGVFLLD 231
           D    LL+
Sbjct: 171 DWTAALLN 178

>ref|XP_300858.1| hypothetical protein XP_300858 [Homo sapiens]
           gi|15082519|gb|AAH12170.1| Similar to RIKEN cDNA
           6230427J02 gene [Homo sapiens]
          Length = 285

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 24/68 (35%), Positives = 30/68 (43%), Gaps = 2/68 (2%)
 Frame = -3

Query: 428 LPAPSRRQPARPRMRYVVHSAQELPQADCAPFASKEPAWHPSPEPPEHACVS--RSLEYE 255
           LP   R  P+   +R    S   LP    AP AS  P  HP P+    AC+   + LE E
Sbjct: 109 LPVSQRPAPSAQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQGLEAE 168

Query: 254 DLGVFLLD 231
           D    LL+
Sbjct: 169 DWTAALLN 176

>ref|NP_851896.1| very large tegument protein [Cercopithecine herpesvirus 1]
           gi|30844278|gb|AAP41454.1| very large tegument protein
           [Cercopithecine herpesvirus 1]
          Length = 3288

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -2

Query: 519 SAEAPALRWRAKRPL-RPQTPHNPQAALVLEPPSTEPEAASASSDALRGPFRTRATASRL 343
           S+E P    R   P  RP TP NP A+   EPP+  PE A A S   + P       +  
Sbjct: 503 SSEPPTPAGRPPTPAGRPPTPANPTASS--EPPTPNPEGAPAPSSNEQPPAAASTDEATQ 560

Query: 342 CALCEQRARMAPQP 301
            AL   R R  P+P
Sbjct: 561 KALDALRDRQPPEP 574

>ref|ZP_00057769.1| COG3599: Cell division initiation protein [Thermobifida fusca]
          Length = 280

 Score = 36.2 bits (82), Expect = 0.26
 Identities = 22/55 (40%), Positives = 29/55 (52%)
 Frame = -2

Query: 474 RPQTPHNPQAALVLEPPSTEPEAASASSDALRGPFRTRATASRLCALCEQRARMA 310
           +PQ P  PQ A   E P  +PE A A++  L G      TA+R+ AL +Q A  A
Sbjct: 69  QPQEPPAPQEAPQPEMPMRQPEPAPAAAMGLPGGEDNMDTAARVLALAQQTADQA 123

>gb|AAK53824.1|AC011806_1 Putative protein with region similar to cyclin-dependent kinase
           like proteins [Oryza sativa]
          Length = 270

 Score = 36.2 bits (82), Expect = 0.26
 Identities = 24/74 (32%), Positives = 31/74 (41%)
 Frame = -2

Query: 516 AEAPALRWRAKRPLRPQTPHNPQAALVLEPPSTEPEAASASSDALRGPFRTRATASRLCA 337
           A AP   WRA  P  P  P +P AA    PP   P AAS +   LR   + +    +   
Sbjct: 86  ASAPPPPWRALPPAGPPPPPSPGAASSRPPPLPSPGAASIA--GLRAAAKAKGEGVKRTR 143

Query: 336 LCEQRARMAPQPGA 295
             ++  R  P P A
Sbjct: 144 TRDRSQRAGPAPEA 157



EST assemble image


clone accession position
1 HCL057b06_r AV642747 1 479
2 CL21c12_r AV394352 28 520




Chlamydomonas reinhardtii
Kazusa DNA Research Institute