Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000343A_C01 KCC000343A_c01
(475 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201402.2| heterogeneous nuclear ribonucleoprotein (hnRNP)... 67 1e-10
dbj|BAB10406.1| contains similarity to ribonucleoprotein F~gene_... 67 1e-10
ref|NP_650120.1| CG6946-PA [Drosophila melanogaster] gi|24646107... 66 2e-10
dbj|BAC40188.1| unnamed protein product [Mus musculus] 65 3e-10
ref|NP_005511.1| heterogeneous nuclear ribonucleoprotein H1 [Hom... 65 3e-10
>ref|NP_201402.2| heterogeneous nuclear ribonucleoprotein (hnRNP), putative
[Arabidopsis thaliana]
Length = 289
Score = 67.0 bits (162), Expect = 1e-10
Identities = 31/73 (42%), Positives = 44/73 (59%)
Frame = +3
Query: 111 VLKMKGIPFKATAMDVRKFFANYKIKPEGVSFIMHADGRPTGMAFIEFETPQEAVRAMEK 290
VLKM+G+P+ + +FF+ YK+ V + DG+ TG AF+EFET +EA RAM K
Sbjct: 201 VLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAK 260
Query: 291 DRAKFGPEYGDRF 329
D+ G Y + F
Sbjct: 261 DKMSIGSRYVELF 273
Score = 45.4 bits (106), Expect = 3e-04
Identities = 23/77 (29%), Positives = 42/77 (53%)
Frame = +3
Query: 99 GGEGVLKMKGIPFKATAMDVRKFFANYKIKPEGVSFIMHADGRPTGMAFIEFETPQEAVR 278
GG V++++G+PF +D+ +FFA I ++ +G+ +G AF+ F P +
Sbjct: 80 GGFPVVRLRGLPFNCADIDIFEFFAGLNIVD---VLLVSKNGKFSGEAFVVFAGPMQVEI 136
Query: 279 AMEKDRAKFGPEYGDRF 329
A+++DR G Y + F
Sbjct: 137 ALQRDRHNMGRRYVEVF 153
>dbj|BAB10406.1| contains similarity to ribonucleoprotein F~gene_id:K2A18.8
[Arabidopsis thaliana]
Length = 248
Score = 67.0 bits (162), Expect = 1e-10
Identities = 31/73 (42%), Positives = 44/73 (59%)
Frame = +3
Query: 111 VLKMKGIPFKATAMDVRKFFANYKIKPEGVSFIMHADGRPTGMAFIEFETPQEAVRAMEK 290
VLKM+G+P+ + +FF+ YK+ V + DG+ TG AF+EFET +EA RAM K
Sbjct: 160 VLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAK 219
Query: 291 DRAKFGPEYGDRF 329
D+ G Y + F
Sbjct: 220 DKMSIGSRYVELF 232
Score = 45.4 bits (106), Expect = 3e-04
Identities = 23/77 (29%), Positives = 42/77 (53%)
Frame = +3
Query: 99 GGEGVLKMKGIPFKATAMDVRKFFANYKIKPEGVSFIMHADGRPTGMAFIEFETPQEAVR 278
GG V++++G+PF +D+ +FFA I ++ +G+ +G AF+ F P +
Sbjct: 39 GGFPVVRLRGLPFNCADIDIFEFFAGLNIVD---VLLVSKNGKFSGEAFVVFAGPMQVEI 95
Query: 279 AMEKDRAKFGPEYGDRF 329
A+++DR G Y + F
Sbjct: 96 ALQRDRHNMGRRYVEVF 112
>ref|NP_650120.1| CG6946-PA [Drosophila melanogaster] gi|24646107|ref|NP_731639.1|
CG6946-PB [Drosophila melanogaster]
gi|7299517|gb|AAF54704.1| CG6946-PA [Drosophila
melanogaster] gi|7299518|gb|AAF54705.1| CG6946-PB
[Drosophila melanogaster] gi|19528177|gb|AAL90203.1|
AT27789p [Drosophila melanogaster]
Length = 586
Score = 66.2 bits (160), Expect = 2e-10
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Frame = +3
Query: 9 KVFSEKFGDRYVRLIQVSRKEMQATLALRFGGEG---VLKMKGIPFKATAMDVRKFFANY 179
K+ G RY+ + + KE + + + G G V+K++G+P+ T + +FF+
Sbjct: 111 KLNKASMGHRYIEVFTATPKEAKEAMR-KISGHGTAFVVKLRGLPYAVTEQQIEEFFSGL 169
Query: 180 KIKP--EGVSFIMHADGRPTGMAFIEFETPQEAVRAMEKDRAKFGPEYGDRF 329
IK EG+ F+M GR TG AF++FE+ + +A+ ++R K G Y + F
Sbjct: 170 DIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIF 221
Score = 38.1 bits (87), Expect = 0.053
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +3
Query: 99 GGEG------VLKMKGIPFKATAMDVRKFFANYKIKPEGVSFIMHADGRPTGMAFIEFET 260
GG G + M+G+P+ + DV KFF I+P V + G +G A F+T
Sbjct: 472 GGRGNDIEYYTIHMRGLPYTSFENDVFKFFE--PIRPANVRINYNKKGLHSGTADAYFDT 529
Query: 261 PQEAVRAMEKDRAKFGPEYGDRF 329
+++ AM++ R + G Y + F
Sbjct: 530 YEDSQVAMKRHREQMGSRYIELF 552
>dbj|BAC40188.1| unnamed protein product [Mus musculus]
Length = 472
Score = 65.5 bits (158), Expect = 3e-10
Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Frame = +3
Query: 99 GGEG-VLKMKGIPFKATAMDVRKFFANYKIK--PEGVSFIMHADGRPTGMAFIEFETPQE 269
GGEG V+K++G+P+ +A +V++FF++ KI+ +G+ FI +GRP+G AF+E E+ E
Sbjct: 7 GGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 270 AVRAMEKDRAKFGPEYGDRF 329
A++KDR G Y + F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 58.9 bits (141), Expect = 3e-08
Identities = 30/109 (27%), Positives = 59/109 (53%), Gaps = 6/109 (5%)
Frame = +3
Query: 21 EKFGDRYVRLIQVSRKEMQATL------ALRFGGEGVLKMKGIPFKATAMDVRKFFANYK 182
E G RYV + + + EM L + +G ++++G+PF + ++ +FF+ +
Sbjct: 76 ETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLE 135
Query: 183 IKPEGVSFIMHADGRPTGMAFIEFETPQEAVRAMEKDRAKFGPEYGDRF 329
I P G++ + GR TG AF++F + + A +A++K + + G Y + F
Sbjct: 136 IVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 53.1 bits (126), Expect = 2e-06
Identities = 28/70 (40%), Positives = 41/70 (58%)
Frame = +3
Query: 120 MKGIPFKATAMDVRKFFANYKIKPEGVSFIMHADGRPTGMAFIEFETPQEAVRAMEKDRA 299
M+G+P++AT D+ FF+ + P V + DGR TG A +EF T ++AV AM KD+A
Sbjct: 293 MRGLPYRATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 300 KFGPEYGDRF 329
Y + F
Sbjct: 351 NMQHRYVELF 360
>ref|NP_005511.1| heterogeneous nuclear ribonucleoprotein H1 [Homo sapiens]
gi|1710632|sp|P31943|ROH1_HUMAN Heterogeneous nuclear
ribonucleoprotein H (hnRNP H) gi|2134669|pir||I39358
heterogeneous nuclear ribonucleoprotein H - human
gi|347314|gb|AAA91346.1| hnRNP H
gi|12655001|gb|AAH01348.1| HNRPH1 protein [Homo sapiens]
Length = 449
Score = 65.5 bits (158), Expect = 3e-10
Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Frame = +3
Query: 99 GGEG-VLKMKGIPFKATAMDVRKFFANYKIK--PEGVSFIMHADGRPTGMAFIEFETPQE 269
GGEG V+K++G+P+ +A +V++FF++ KI+ +G+ FI +GRP+G AF+E E+ E
Sbjct: 7 GGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 270 AVRAMEKDRAKFGPEYGDRF 329
A++KDR G Y + F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 58.9 bits (141), Expect = 3e-08
Identities = 30/109 (27%), Positives = 59/109 (53%), Gaps = 6/109 (5%)
Frame = +3
Query: 21 EKFGDRYVRLIQVSRKEMQATL------ALRFGGEGVLKMKGIPFKATAMDVRKFFANYK 182
E G RYV + + + EM L + +G ++++G+PF + ++ +FF+ +
Sbjct: 76 ETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLE 135
Query: 183 IKPEGVSFIMHADGRPTGMAFIEFETPQEAVRAMEKDRAKFGPEYGDRF 329
I P G++ + GR TG AF++F + + A +A++K + + G Y + F
Sbjct: 136 IVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 53.1 bits (126), Expect = 2e-06
Identities = 28/70 (40%), Positives = 41/70 (58%)
Frame = +3
Query: 120 MKGIPFKATAMDVRKFFANYKIKPEGVSFIMHADGRPTGMAFIEFETPQEAVRAMEKDRA 299
M+G+P++AT D+ FF+ + P V + DGR TG A +EF T ++AV AM KD+A
Sbjct: 293 MRGLPYRATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 300 KFGPEYGDRF 329
Y + F
Sbjct: 351 NMQHRYVELF 360
