KCC000333A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000333A_C01 KCC000333A_c01
CCGCCCCAAAGCTATACCGTGTCGCGAAAACGTACTCGTTACTACTTTCGTTGAACGGCA
AGAACTGCGAGCGCACTATTGGGGCTAAAATAGGTGCCCGACCAGCCGTCACGCTTACAC
GCCGAAGAACACGCAACGCTGCAGCAGGGTGCGGATCGCCGTCCAAGCGGTCGCCAGCAC
CTCGGGCAGCGGCGAGCTCGGGAGTGCGCAGGCGCTCGCCCAGGCACTCGCCGCCCGCTG
TGGCTTGGTCGCTACAGTTCGTCAGGGTATATCAACGGACTTTCATCATATGCGTCACGC
ATTCCTGCTCGCTCAGCTTTACCCTGGGCAAGGGCCCGCAGTTGTTGTGGACCCGAACTT
CCGGGACCGCTTCGTGTACAGCATGCTGCCCCCAAACACGACCTACGGCGCCTGCGTCGC
AGCGTTGCCGAAGCTGTTTGTGGGCACGCTGGCCACCATCGCCTCCCTGGTGAACCTCGT
GTCATCGGCCCTGCAAAAAGAGGCTGCTGCCCGGGGCCACGACCTGCCGCCGTGGCGCAG
CCCCCGAGCGCTCATGACGAACTGGCTACCCGCGCGCTTCACTGACTCGGTGCACGCCCC
GCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000333A_C01 KCC000333A_c01
         (604 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP44687.1| unknown protein [Oryza sativa (japonica cultivar-...    54  2e-06
dbj|BAC06216.1| P0018C10.17 [Oryza sativa (japonica cultivar-gro...    52  5e-06
gb|AAN06859.1| Unknown protein [Oryza sativa (japonica cultivar-...    52  6e-06
gb|AAP53781.1| unknown protein [Oryza sativa (japonica cultivar-...    50  2e-05
gb|AAM08786.1|AC016780_16 Hypothetical protein [Oryza sativa]          50  2e-05

>gb|AAP44687.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 402

 Score = 53.5 bits (127), Expect = 2e-06
 Identities = 37/139 (26%), Positives = 60/139 (42%)
 Frame = +2

Query: 152 RIAVQAVASTSGSGELGSAQALAQALAARCGLVATVRQGISTDFHHMRHAFLLAQLYPGQ 331
           RIA +    + G  E   A A           V   R   ++ +    H ++ A +  G+
Sbjct: 164 RIAERCCKGSKGKAECRRAVADGLRALGYDAAVCRSRWEKTSSYPAGEHEYIDAVV--GE 221

Query: 332 GPAVVVDPNFRDRFVYSMLPPNTTYGACVAALPKLFVGTLATIASLVNLVSSALQKEAAA 511
              ++V+ +FR  F   +      Y A + ALP LFVGT   +  +V +V+ A ++    
Sbjct: 222 EVRLIVEVDFRSEF--EVARSTKAYRAALQALPPLFVGTPDRLGQIVAVVAEAARQSLKK 279

Query: 512 RGHDLPPWRSPRALMTNWL 568
           +G   PPWR P  +   WL
Sbjct: 280 KGLHFPPWRKPEYMRAKWL 298

>dbj|BAC06216.1| P0018C10.17 [Oryza sativa (japonica cultivar-group)]
           gi|22202683|dbj|BAC07341.1| P0471B04.25 [Oryza sativa
           (japonica cultivar-group)]
          Length = 263

 Score = 52.4 bits (124), Expect = 5e-06
 Identities = 28/88 (31%), Positives = 41/88 (45%)
 Frame = +2

Query: 341 VVVDPNFRDRFVYSMLPPNTTYGACVAALPKLFVGTLATIASLVNLVSSALQKEAAARGH 520
           ++VD +FR +F   +  P   Y    + LP +FVG    +   V L+  A Q+     G 
Sbjct: 77  LIVDVDFRSQF--QLARPAPWYAHLSSRLPPVFVGPPEKLRQAVALLCMAAQRSLRESGL 134

Query: 521 DLPPWRSPRALMTNWLPARFTDSVHAPP 604
            +PPWR P  +   WLP R   +   PP
Sbjct: 135 HVPPWRRPSYVQAKWLPCRGVQASALPP 162

>gb|AAN06859.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 307

 Score = 52.0 bits (123), Expect = 6e-06
 Identities = 32/95 (33%), Positives = 43/95 (44%), Gaps = 4/95 (4%)
 Frame = +2

Query: 296 HAFLLAQLYPGQGPA----VVVDPNFRDRFVYSMLPPNTTYGACVAALPKLFVGTLATIA 463
           HA+L   L P    A    ++VD +FR  F   +  P   Y A +  LP +FVG    + 
Sbjct: 183 HAYLDVLLPPASDRAERERILVDVDFRSEF--EVARPTKAYRAVLQRLPSVFVGKEDRLR 240

Query: 464 SLVNLVSSALQKEAAARGHDLPPWRSPRALMTNWL 568
            LV   + A +     RG  LPPWR P  +   WL
Sbjct: 241 LLVAAAADAARASLKKRGLHLPPWRKPEYMRAKWL 275

>gb|AAP53781.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 301

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
 Frame = +2

Query: 296 HAFLLAQLYP----GQGPAVVVDPNFRDRFVYSMLPPNTTYGACVAALPKLFVGTLATIA 463
           HA++   L P    G    V+VD +FR  F   +  P   Y A +  LP +FVG    + 
Sbjct: 178 HAYVDVLLPPASDRGARERVLVDVDFRSAF--EVARPTKAYRALLQRLPAVFVGKDDRLR 235

Query: 464 SLVNLVSSALQKEAAARGHDLPPWRSPRALMTNWLPARFTDSVHAPP 604
            LV   + A +     RG  LPPWR P  +   WL     D   APP
Sbjct: 236 LLVAASADAARASLRKRGLHLPPWRKPEYMRAKWLSP--YDREPAPP 280

>gb|AAM08786.1|AC016780_16 Hypothetical protein [Oryza sativa]
          Length = 285

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
 Frame = +2

Query: 296 HAFLLAQLYP----GQGPAVVVDPNFRDRFVYSMLPPNTTYGACVAALPKLFVGTLATIA 463
           HA++   L P    G    V+VD +FR  F   +  P   Y A +  LP +FVG    + 
Sbjct: 162 HAYVDVLLPPASDRGARERVLVDVDFRSAF--EVARPTKAYRALLQRLPAVFVGKDDRLR 219

Query: 464 SLVNLVSSALQKEAAARGHDLPPWRSPRALMTNWLPARFTDSVHAPP 604
            LV   + A +     RG  LPPWR P  +   WL     D   APP
Sbjct: 220 LLVAASADAARASLRKRGLHLPPWRKPEYMRAKWLSP--YDREPAPP 264



EST assemble image


clone accession position
1 CL69b12_r AV396782 1 426
2 LCL060f07_r AV629543 220 700
3 CL66c12_r AV396770 271 715
4 CL20a06_r AV394296 394 651




Chlamydomonas reinhardtii
Kazusa DNA Research Institute