KCC000322A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000322A_C01 KCC000322A_c01
tcgtaagtcGCTAATTCTTGATACTTCTTTGCCACCTATCCTCAGTATCCACCACTGACG
GACAAGAGGCGTGAAAATGCCCAGTTTAGCGAAGCTTGTCAGATAGCTGCCACTTCGAAT
GCTGCAAATCTGCAGTCCTGTGTCCTTTTAGATCTCGCTGCTACACTCCTCGCTCGGGCT
CAGCGGTCCAGATTTCTCCCGTCTGGAGGTCCAGGCCCGGGCACGGGCCTGGCTCCTGGC
TTCTGGCACAGCTAGCGCGCGTGAGCTAGCGTCACAGCATGTACACTCTGCGCGTCGTGG
CGTCAGAGCGGCGCATGTCGCAGGTGGCGCTGCCCTCGGCGATGGGGTCGCGCGGCGACG
GGCATCCGCCCCGCGACGCCGGGGACGACAGCGATAGCGATAGCGAGGGCGAACTGCTCG
GTCTCGACCTCGATAATGATAGCGAGGCCATTGAATTCACGGCCGGCAATCCGCGCGTGG
AGCACATAACGGGCGTGGTGCATCTGTTCCGGCCCACGCCTGGTCGCCTTCCTGCCAACG
CACC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000322A_C01 KCC000322A_c01
         (544 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||S54834 HP8 peptide - human (fragment)                             45  6e-04
emb|CAA60698.1| HP8 peptide [Homo sapiens]                             45  6e-04
pir||D34768 ORF4 protein - Orf virus (strain NZ2) gi|332566|gb|A...    42  0.007
gb|AAH56275.1| Unknown (protein for MGC:65772) [Danio rerio]           40  0.015
dbj|BAC92439.1| hypothetical protein [Oryza sativa (japonica cul...    40  0.026

>pir||S54834 HP8 peptide - human (fragment)
          Length = 200

 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 27/79 (34%), Positives = 34/79 (42%)
 Frame = -2

Query: 453 QWPRYHYRGRDRAVRPRYRYRCRPRRRGADARRRATPSPRAAPPATCAALTPRRAECTCC 274
           +WP      R R  RPR R R R  R        +     A PP TC+ +TPRR    C 
Sbjct: 19  RWPACSLTSRRRRRRPRTRTRTRRPRTWPPRTCSSRSRTAARPPCTCSPVTPRRRPRPCP 78

Query: 273 DASSRALAVPEARSQARAR 217
             + R  +VP  R   RA+
Sbjct: 79  ARTPRPRSVPACRPWQRAQ 97

>emb|CAA60698.1| HP8 peptide [Homo sapiens]
          Length = 341

 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 27/79 (34%), Positives = 34/79 (42%)
 Frame = -2

Query: 453 QWPRYHYRGRDRAVRPRYRYRCRPRRRGADARRRATPSPRAAPPATCAALTPRRAECTCC 274
           +WP      R R  RPR R R R  R        +     A PP TC+ +TPRR    C 
Sbjct: 160 RWPACSLTSRRRRRRPRTRTRTRRPRTWPPRTCSSRSRTAARPPCTCSPVTPRRRPRPCP 219

Query: 273 DASSRALAVPEARSQARAR 217
             + R  +VP  R   RA+
Sbjct: 220 ARTPRPRSVPACRPWQRAQ 238

>pir||D34768 ORF4 protein - Orf virus (strain NZ2) gi|332566|gb|AAA46790.1| ORF4
          Length = 264

 Score = 41.6 bits (96), Expect = 0.007
 Identities = 35/93 (37%), Positives = 43/93 (45%), Gaps = 2/93 (2%)
 Frame = -2

Query: 429 GRDRAVRPRYRYRCRPRRRGADARRRATPSPRAAPP-ATCAALTPRRAECTCCDASSRAL 253
           GR  A RP        RR    A R +  + R APP A   A  PRRA      + SRA 
Sbjct: 156 GRYPAARPAAASAAASRRHRGPAARSSPAAERPAPPRARAEAAAPRRAS----SSGSRAS 211

Query: 252 AVPEARSQARARAWT-SRREKSGPLSPSEECSS 157
           + P  RS AR+ A + SR   SGP + +   SS
Sbjct: 212 SGPPRRSAARSSAASGSRPAASGPAARAPAASS 244

>gb|AAH56275.1| Unknown (protein for MGC:65772) [Danio rerio]
          Length = 248

 Score = 40.4 bits (93), Expect = 0.015
 Identities = 38/133 (28%), Positives = 55/133 (40%), Gaps = 3/133 (2%)
 Frame = -2

Query: 543 VRWQEGDQAWAGTDAPRPLCAPRADCRP*IQWPRYHYRGRDRAVRPRYRYRCRPRRRGAD 364
           +++ +GD+   G    +   +PR+         RY    R R  R R   R R R    D
Sbjct: 83  IQFAQGDRKTPGQMKNKERSSPRSS--------RYEDSDRRRRSRSRSYDRRRSRSPSYD 134

Query: 363 ARRRATPSPRAAPPATCAALT---PRRAECTCCDASSRALAVPEARSQARARAWTSRREK 193
            RRR + SPR +   T +  +    R    T     SR  A   +RS +R+RA   RRE 
Sbjct: 135 RRRRRSDSPRESRGRTHSRRSREHDRHRGSTRDHHRSRTDAASRSRSPSRSRARGGRRES 194

Query: 192 SGPLSPSEECSSE 154
            G  S +   S +
Sbjct: 195 DGARSHTHSASPQ 207

>dbj|BAC92439.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|35215083|dbj|BAC92440.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 176

 Score = 39.7 bits (91), Expect = 0.026
 Identities = 27/56 (48%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -2

Query: 444 RYHYRGRDRAV---RPRYRYRCRPRRRGADARRRATPSPRAAPPATCAALTPRRAE 286
           R H RGR  A    +PR R R RPRR G   R R  P+PR +PPAT  A   R  E
Sbjct: 88  RTHGRGRLTAGPTWQPRGRARGRPRRHGR--RERRAPAPRWSPPATTGAAERRPRE 141



EST assemble image


clone accession position
1 LCL091c10_r AV631277 1 275
2 HCL008c08_r AV639982 10 496
3 CL19d12_r AV394193 33 191
4 HCL087g07_r AV644395 154 510
5 LCL035h10_r AV628047 154 544




Chlamydomonas reinhardtii
Kazusa DNA Research Institute