Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000320A_C01 KCC000320A_c01
(358 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_343507.1| similar to hypothetical protein FLJ20574 [Rattu... 33 0.78
dbj|BAC86591.1| unnamed protein product [Homo sapiens] 33 1.3
ref|NP_189947.1| tubulin family [Arabidopsis thaliana] gi|996751... 32 2.3
ref|NP_925928.1| unknown protein [Gloeobacter violaceus] gi|3521... 30 6.6
ref|XP_171382.1| similar to DKFZP586O0120 protein [Homo sapiens] 30 8.6
>ref|XP_343507.1| similar to hypothetical protein FLJ20574 [Rattus norvegicus]
Length = 1695
Score = 33.5 bits (75), Expect = 0.78
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 329 PVKRVLVRGLMSHCFYKAVLRPTSKLACSKDAL--SRNLQMCLGPGSADKKLLSQEPIAG 156
P KR+ G++ H F+K LR + S+D+ SRN+ C GP D + L Q P G
Sbjct: 178 PQKRLSWEGVLQHPFWKDALRREDSDSVSEDSTFSSRNVMECSGP--HDSRELLQSPKNG 235
>dbj|BAC86591.1| unnamed protein product [Homo sapiens]
Length = 159
Score = 32.7 bits (73), Expect = 1.3
Identities = 22/54 (40%), Positives = 29/54 (52%), Gaps = 2/54 (3%)
Frame = -3
Query: 350 LSPSSILPVKRVLVRGLMSHCFYKAVLRPTSKLACSKD--ALSRNLQMCLGPGS 195
LSP+ P K VL RGL HC L PTS ++ + A+S+ +C PGS
Sbjct: 82 LSPTRYKPSKHVLPRGLCLHCVIP--LDPTSPMSPPAEPFAISKAHLVCSPPGS 133
>ref|NP_189947.1| tubulin family [Arabidopsis thaliana] gi|9967510|emb|CAC05635.1|
putative protein [Arabidopsis thaliana]
Length = 1120
Score = 32.0 bits (71), Expect = 2.3
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = -3
Query: 335 ILPVKRVLVRGLMSHCFYKAVLRPTSKLACSKDALSRNLQMCLGPGSADKKLLSQEPIAG 156
I P+K V RG + CF L P + +++ L++C P S K P
Sbjct: 344 ISPLKSVRERGGLVPCFLNGFLEPIVRAGQQLQVITKLLELCNLPASGHKNYTDLLPCWT 403
Query: 155 FFDT 144
+F T
Sbjct: 404 YFST 407
>ref|NP_925928.1| unknown protein [Gloeobacter violaceus] gi|35213552|dbj|BAC90923.1|
gll2982 [Gloeobacter violaceus]
Length = 144
Score = 30.4 bits (67), Expect = 6.6
Identities = 18/59 (30%), Positives = 25/59 (41%)
Frame = -2
Query: 333 SPREESLGQGADEPLLLQGCA*AHQQACLLERRSLKKSPDVPRSWLGGQEAFVSGTDSW 157
S R +SL GA E + + Q LLE + ++ PD P W A + D W
Sbjct: 59 SERAQSLANGAVELITSKAVVIEEAQYVLLENEARRRVPDDPDDWPTVATALLLEADIW 117
>ref|XP_171382.1| similar to DKFZP586O0120 protein [Homo sapiens]
Length = 193
Score = 30.0 bits (66), Expect = 8.6
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -3
Query: 356 NCLSPSSILPVKRVLVRGLMSHCFYKAVLRPTSKLACSKDALSRNLQMCL---GPGSA 192
N L P+S L + RGL + AV RP LAC+ +L++ L GPG A
Sbjct: 102 NALRPTSCLCLDETDPRGLELMPAWPAVCRPPRGLACAPFETPSSLELMLFPAGPGEA 159
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,520,977
Number of Sequences: 1537769
Number of extensions: 6597934
Number of successful extensions: 17510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17510
length of database: 498,525,298
effective HSP length: 94
effective length of database: 353,975,012
effective search space used: 8495400288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
