KCC000302A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000302A_C01 KCC000302A_c01
CGATTGGTCGGCGCGCACAGGCGCAAGGGAGAGGCGCTAGGAAGGGAGCCGAGGAGCCGG
GCGCAGCTGCGATGGTGCTTGCGCGCGAACGTGTTGCAAACAGCCTCAGAGGGCCCCAGC
CGGCGCGCTGAAGCCCATTTCTTACATGTCCAGATTGACCTCCGGCGGCCGCTAGAGCCT
AGGCGCCTTTTGACGCCCCTTGACGCCCCTTGAACCCCCGCAGAGGCCGCAACGTACGCG
CCGGGTTCCACTCAGCCGACGCGGCCGACGCCTCCTGCGCTGGCGCCGCGACTGGAGAAG
ATGAAGCGCTTGCGGCCGAGGCGGTGGCACCACCCCATTCGGACAGGGCAGTACCCGTCG
TTCGCGCCTAGCGGGAATTACACTTGGGCAGAACCCATCTGACCGGTTCTCAGGCAGCAC
CCGCACGCGGTCTTCGGCGCCACGCATTCGAACAAGGCGGGACCCGTCGTACGTACGAGG
GCAGAACCCAAGACAGAGGCCGAGTCTCGGGCAGCACCCGCACGCGCGACTTGGGGGGCA
GCACCCCGCGTTCCGATCGAGCAGCACCCGTTCGCTCGTGTACAGCGGGCAAATGTCTTC
GGCAATGCCGCAGCCAGGCCGCGCCCTCTTCCAGCCCACGCATACGACTGACGGCACGTT
CTGCCACCTCCCCCTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000302A_C01 KCC000302A_c01
         (676 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAC33327.1| flagellar hook length determination protein homol...    44  0.003
gb|AAM09691.1|AF490532_1 bradykinin-potentiating protein precurs...    42  0.006
gb|AAK53449.1| unknown [Streptomyces aureofaciens]                     42  0.008
ref|NP_459903.1| Fels-1 prophage; putative minor tail protein [S...    41  0.014
dbj|BAC83572.1| fibroin-like protein [Oryza sativa (japonica cul...    41  0.014

>gb|AAC33327.1| flagellar hook length determination protein homolog [Caulobacter
           crescentus]
          Length = 595

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
 Frame = -1

Query: 322 ASAASASSSPVAAPAQEASAASAEWNPARTLRPLRGFKGRQGASKG-A*ALAAAGGQSGH 146
           A A  A S+PVAAPA  A+ A+        + P        GAS G A A A A G +  
Sbjct: 337 AEATKAQSAPVAAPAVVAAEAAETPQAVAAVAP--------GASSGDANANANANGDTNT 388

Query: 145 VRNGLQRAGWGPLRLFATRSRASTIAAAPGSSAPFLAPLPCACARRP 5
              G + A    + L  + + A+T  A+P ++   LAP P A A  P
Sbjct: 389 NAKGSETAAGAAVTLETSVAGAATTEASPSATPTPLAPTPVASANAP 435

>gb|AAM09691.1|AF490532_1 bradykinin-potentiating protein precursor [Bothrops insularis]
          Length = 146

 Score = 42.4 bits (98), Expect = 0.006
 Identities = 23/47 (48%), Positives = 28/47 (58%), Gaps = 2/47 (4%)
 Frame = -2

Query: 327 PPPRPQA--LHLLQSRRQRRRRRPRRLSGTRRVRCGLCGGSRGVKGR 193
           PPPRPQ   LH +  RR + RRRPRR    RR RCG C  +   +G+
Sbjct: 91  PPPRPQIPPLHPIGCRRAKGRRRPRR----RRGRCGTCAPTASRRGK 133

>gb|AAK53449.1| unknown [Streptomyces aureofaciens]
          Length = 579

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 66/224 (29%), Positives = 73/224 (32%), Gaps = 12/224 (5%)
 Frame = +1

Query: 34  ALGREPRSRAQLRWCLRANVLQTASEGPSRRAEAHFLHVQIDLRRPLEPRRLLTPLDAP* 213
           A GR  R RA+   C          EGP+  A A          RP   R    P  AP 
Sbjct: 355 APGRARRIRARGSRCRCCRGAGVEPEGPANGAGAGRPTATSGYARPQHAR---PPARAPP 411

Query: 214 TPAEAATYAPGS---------TQPTRPTPPALAPRLEKMKRLRPRRWHHPIRTGQYPSFA 366
            P  A T A  +         + PTRPT P+ AP         P     P R    P   
Sbjct: 412 GPRPAPTRAASTPARTGSRPASPPTRPTAPSPAPAAPPRAAAAPT----PARRPPPP--- 464

Query: 367 PSGNYTWAEPI*PVLRQHPHAVFGATHSNKAGPVVRTR-AEPKTEAESRAAP--ARATWG 537
                    P  PV    P A  G    N   P  R R A  +  A    AP   R    
Sbjct: 465 ---------PTPPV----PRARRGPAAGNGRPPSTRDRTAGTRAPASPPGAPPPVRRRRP 511

Query: 538 AAPRVPIEQHPFARVQRANVFGNAAARPRPLPAHAYD*RHVLPP 669
             PR P   HP AR    N    A  RPRP P  +   R   PP
Sbjct: 512 PPPRAPPPHHPSAR----NPSARATPRPRPPPRPSAAARPEPPP 551

>ref|NP_459903.1| Fels-1 prophage; putative minor tail protein [Salmonella
           typhimurium LT2] gi|16419437|gb|AAL19862.1| putative
           Fels-1 prophage minor tail protein [phage Fels-1]
          Length = 790

 Score = 41.2 bits (95), Expect = 0.014
 Identities = 36/116 (31%), Positives = 55/116 (47%)
 Frame = -1

Query: 361 TTGTALSEWGGATASAASASSSPVAAPAQEASAASAEWNPARTLRPLRGFKGRQGASKGA 182
           + GTA ++ G A+ASAASA ++  AA A EA+A ++E N   +         R  A   A
Sbjct: 172 SAGTATTKAGEASASAASADTARTAAAASEAAAKTSEANADAS---------RTAAGDSA 222

Query: 181 *ALAAAGGQSGHVRNGLQRAGWGPLRLFATRSRASTIAAAPGSSAPFLAPLPCACA 14
              AAA   +   +   +RAG        + ++A++ A   G+SA   A    A A
Sbjct: 223 ---AAAAASATAAQTSAERAGASETAAKTSETQAASSAGDAGASATAAAASEKAAA 275

>dbj|BAC83572.1| fibroin-like protein [Oryza sativa (japonica cultivar-group)]
          Length = 321

 Score = 41.2 bits (95), Expect = 0.014
 Identities = 39/107 (36%), Positives = 48/107 (44%)
 Frame = -1

Query: 361 TTGTALSEWGGATASAASASSSPVAAPAQEASAASAEWNPARTLRPLRGFKGRQGASKGA 182
           TTG   S WGGA  +AA+A   P AA A E+S  +             G  G     +  
Sbjct: 54  TTGGGSSGWGGAPRAAATAPLLPRAAAAVESSPTT------------DGGGGALPHHRRV 101

Query: 181 *ALAAAGGQSGHVRNGLQRAGWGPLRLFATRSRASTIAAAPGSSAPF 41
            + AAAGG SG       R G G   L +T S A T  AAP + +PF
Sbjct: 102 PSAAAAGGSSG-------RGGGGGGALPSTGSTA-TATAAPRNPSPF 140

 Score = 33.9 bits (76), Expect = 2.3
 Identities = 33/99 (33%), Positives = 41/99 (41%)
 Frame = -1

Query: 361 TTGTALSEWGGATASAASASSSPVAAPAQEASAASAEWNPARTLRPLRGFKGRQGASKGA 182
           TTG   S WGGA  +A +    P AA A E+S  +             G  G     +  
Sbjct: 222 TTGGGSSGWGGAPRAAVTVPLLPRAAAAVESSPTT------------DGGGGALPHHRRV 269

Query: 181 *ALAAAGGQSGHVRNGLQRAGWGPLRLFATRSRASTIAA 65
            + AAAGG SG       R G G   L +T S A+  AA
Sbjct: 270 PSAAAAGGSSG-------RGGGGGGALPSTGSTATATAA 301



EST assemble image


clone accession position
1 HCL018e04_r AV640571 1 527
2 CM094b03_r AV393288 160 676




Chlamydomonas reinhardtii
Kazusa DNA Research Institute