Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000300A_C01 KCC000300A_c01
(650 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC82365.1| unknown [Myxococcus xanthus] 45 0.001
gb|AAQ18030.1| integrase [Agrobacterium tumefaciens] 42 0.006
ref|NP_524775.1| sticky ch1 CG17100-PA [Drosophila melanogaster]... 42 0.008
gb|AAM50242.1| LD15411p [Drosophila melanogaster] 42 0.008
gb|AAF24476.1|AF203477_1 Sticky ch1 [Drosophila melanogaster] 42 0.008
>gb|AAC82365.1| unknown [Myxococcus xanthus]
Length = 542
Score = 44.7 bits (104), Expect = 0.001
Identities = 52/165 (31%), Positives = 64/165 (38%), Gaps = 22/165 (13%)
Frame = -3
Query: 642 PRCSG*ASAPARPAAGPPAATR-PSTCEHGRWP--RCGKRPGCQP*ASHSRV*GCSSCRP 472
PRC SAPA P+AG T PS+C G P RCG PG P H S P
Sbjct: 126 PRCRARPSAPA-PSAGRTCPTAGPSSCASGCCPTGRCGSAPGPTP---HGAEPSPPSQSP 181
Query: 471 S----------HQWSRPVAAAAAGCAWREPCPWAHAPA*S*AG-SRRLVPSQAAARTCPP 325
S RP A+AAG P G +R PS +A+ PP
Sbjct: 182 SPAPASSGGRRRTHPRPARASAAGATAPACLPPPRCCGRPGTGCARTAPPSTSASHPPPP 241
Query: 324 VAAAAPHQRTGSRAARAGPLA--------GQSPWERSNAAMAWVC 214
+ P + +GS AA P + G +P R+ A A C
Sbjct: 242 RSPGTPPRASGSPAAAPAPPSPACRPPPPGTTPAPRNAALPALPC 286
>gb|AAQ18030.1| integrase [Agrobacterium tumefaciens]
Length = 459
Score = 42.4 bits (98), Expect = 0.006
Identities = 26/64 (40%), Positives = 29/64 (44%), Gaps = 5/64 (7%)
Frame = +1
Query: 277 PCSPTTSSLMWCSSRYRRT-----RPCRRLTGHQTPTSSSASRRCMCPRTWFSPRASRGR 441
P S T + + S RY R R L GH+ P A RC CPR W P RGR
Sbjct: 283 PYSDQTKARLRRSFRYIREDFFLGRSLHNLDGHEHPPHHLARHRCQCPRAWHDP--ERGR 340
Query: 442 RRHR 453
RR R
Sbjct: 341 RRLR 344
>ref|NP_524775.1| sticky ch1 CG17100-PA [Drosophila melanogaster]
gi|23170909|gb|AAF54527.2| CG17100-PA [Drosophila
melanogaster]
Length = 698
Score = 42.0 bits (97), Expect = 0.008
Identities = 39/106 (36%), Positives = 47/106 (43%), Gaps = 4/106 (3%)
Frame = -3
Query: 465 QWSRPVAAAAAGCAWREPCPWAHAPA*S*AGSRRLVPSQAAART--CPPVAAAAPHQRTG 292
Q S+ AAAAA A +PA S AG VP T PP A P TG
Sbjct: 235 QRSQQAAAAAAVAAAAVAVANGSSPA-SNAGVDSKVPLTNGGGTGGAPPAADNVPSNSTG 293
Query: 291 S--RAARAGPLAGQSPWERSNAAMAWVCPPHGAGHQSRVPPWFAKE 160
S AA AG + S SNAA + +CPP G ++V P A +
Sbjct: 294 SGSAAACAGGNSNSSGSNSSNAASSTICPPAGGSCPAKVTPLAAHQ 339
>gb|AAM50242.1| LD15411p [Drosophila melanogaster]
Length = 621
Score = 42.0 bits (97), Expect = 0.008
Identities = 39/106 (36%), Positives = 47/106 (43%), Gaps = 4/106 (3%)
Frame = -3
Query: 465 QWSRPVAAAAAGCAWREPCPWAHAPA*S*AGSRRLVPSQAAART--CPPVAAAAPHQRTG 292
Q S+ AAAAA A +PA S AG VP T PP A P TG
Sbjct: 158 QRSQQAAAAAAVAAAAVAVANGSSPA-SNAGVDSKVPLTNGGGTGGAPPAADNVPSNSTG 216
Query: 291 S--RAARAGPLAGQSPWERSNAAMAWVCPPHGAGHQSRVPPWFAKE 160
S AA AG + S SNAA + +CPP G ++V P A +
Sbjct: 217 SGSAAACAGGNSNSSGSNSSNAASSTICPPAGGSCPAKVTPLAAHQ 262
>gb|AAF24476.1|AF203477_1 Sticky ch1 [Drosophila melanogaster]
Length = 610
Score = 42.0 bits (97), Expect = 0.008
Identities = 39/106 (36%), Positives = 47/106 (43%), Gaps = 4/106 (3%)
Frame = -3
Query: 465 QWSRPVAAAAAGCAWREPCPWAHAPA*S*AGSRRLVPSQAAART--CPPVAAAAPHQRTG 292
Q S+ AAAAA A +PA S AG VP T PP A P TG
Sbjct: 235 QRSQQAAAAAAVAAAAVAVANGSSPA-SNAGVDSKVPLTNGGGTGGAPPAADNVPSNSTG 293
Query: 291 S--RAARAGPLAGQSPWERSNAAMAWVCPPHGAGHQSRVPPWFAKE 160
S AA AG + S SNAA + +CPP G ++V P A +
Sbjct: 294 SGSAAACAGGNSNSSGSNSSNAASSTICPPAGGSCPAKVTPLAAHQ 339
