KCC000223A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000223A_C01 KCC000223A_c01
cgaTTCACATGAGATAATAGGGACGGCGAGGAAAAGACACAAAAGGGTAGCAGCGAACTG
CTCGTTGACCGGAACAGCCTCGGAGCACCCCAGAATTTGTAACTCCTAGGTACAATCATG
AATAGGTTATTTGACTTCGGGTTCAAGACCAAGGAGCTTGGGCGCTCGGAGGAAATGGGG
CTGGTGCGCTTGCTAATTCCTGCCGAGAGCGCGCATGAGACCGTGGTTTGCACTCGGAGA
GGAGGTGGGGCTTCTCCAGTTTAAGGACCTGAACACGGACAAGAGCGCCTTTCAGCGGAC
GTTTGCCAATCAGGTGAAGCGCTGCGACGAGATGGCGCGCCGGCTTCGCTTCTTCGCCGA
CCAGGTGGCCAAAGAAGGCATCACGCCGGCCGCGCATGTCACCACGCACTCCTCGGCATC
CTCAGGCAGCGGCGGAGCCCATCCGACGCAAGAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000223A_C01 KCC000223A_c01
         (455 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_850122.1| vacuolar proton-ATPase subunit -related [Arabid...    77  2e-17
pir||H84685 probable vacuolar proton-ATPase subunit [imported] -...    77  2e-17
gb|AAK96647.1| At2g21410/F3K23.17 [Arabidopsis thaliana] gi|2170...    75  4e-16
ref|NP_179736.1| vacuolar proton-ATPase subunit -related [Arabid...    75  4e-16
pir||T06068 probable proton pump F19H22.180 - Arabidopsis thalia...    72  2e-15

>ref|NP_850122.1| vacuolar proton-ATPase subunit -related [Arabidopsis thaliana]
           gi|20259419|gb|AAM14030.1| putative vacuolar
           proton-ATPase subunit [Arabidopsis thaliana]
          Length = 817

 Score = 77.4 bits (189), Expect(2) = 2e-17
 Identities = 35/47 (74%), Positives = 41/47 (86%)
 Frame = +2

Query: 242 EVGLLQFKDLNTDKSAFQRTFANQVKRCDEMARRLRFFADQVAKEGI 382
           E+GLLQF+DLN DKS FQRTFANQVKRC EM+R+LRFF DQ+ K G+
Sbjct: 40  ELGLLQFRDLNADKSPFQRTFANQVKRCGEMSRKLRFFKDQIDKAGL 86

 Score = 32.3 bits (72), Expect(2) = 2e-17
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +1

Query: 154 ELGRSEEMGLVRLLIPAESAHETV 225
           +L RSE+M LV+L+IP ESAH ++
Sbjct: 12  DLMRSEKMTLVQLIIPVESAHRSI 35

>pir||H84685 probable vacuolar proton-ATPase subunit [imported] - Arabidopsis
           thaliana gi|6598613|gb|AAD21487.2| putative vacuolar
           proton-ATPase subunit [Arabidopsis thaliana]
          Length = 780

 Score = 77.4 bits (189), Expect(2) = 2e-17
 Identities = 35/47 (74%), Positives = 41/47 (86%)
 Frame = +2

Query: 242 EVGLLQFKDLNTDKSAFQRTFANQVKRCDEMARRLRFFADQVAKEGI 382
           E+GLLQF+DLN DKS FQRTFANQVKRC EM+R+LRFF DQ+ K G+
Sbjct: 40  ELGLLQFRDLNADKSPFQRTFANQVKRCGEMSRKLRFFKDQIDKAGL 86

 Score = 32.3 bits (72), Expect(2) = 2e-17
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +1

Query: 154 ELGRSEEMGLVRLLIPAESAHETV 225
           +L RSE+M LV+L+IP ESAH ++
Sbjct: 12  DLMRSEKMTLVQLIIPVESAHRSI 35

>gb|AAK96647.1| At2g21410/F3K23.17 [Arabidopsis thaliana]
           gi|21700881|gb|AAM70564.1| At2g21410/F3K23.17
           [Arabidopsis thaliana]
          Length = 821

 Score = 74.7 bits (182), Expect(2) = 4e-16
 Identities = 31/49 (63%), Positives = 44/49 (89%)
 Frame = +2

Query: 242 EVGLLQFKDLNTDKSAFQRTFANQVKRCDEMARRLRFFADQVAKEGITP 388
           ++GL+QFKDLN++KS FQRT+A Q+KRC EMAR++RFF +Q++K G+TP
Sbjct: 44  DLGLVQFKDLNSEKSPFQRTYAAQIKRCGEMARKIRFFKEQMSKAGVTP 92

 Score = 30.4 bits (67), Expect(2) = 4e-16
 Identities = 14/24 (58%), Positives = 19/24 (78%)
 Frame = +1

Query: 154 ELGRSEEMGLVRLLIPAESAHETV 225
           +L RSE M LV++++P ESAH TV
Sbjct: 16  DLMRSEPMQLVQVIVPMESAHLTV 39

>ref|NP_179736.1| vacuolar proton-ATPase subunit -related [Arabidopsis thaliana]
           gi|25290614|pir||H84600 probable vacuolar proton-ATPase
           subunit [imported] - Arabidopsis thaliana
           gi|4567273|gb|AAD23686.1| putative vacuolar
           proton-ATPase subunit [Arabidopsis thaliana]
           gi|15983364|gb|AAL11550.1|AF424556_1 At2g21410/F3K23.17
           [Arabidopsis thaliana] gi|20466448|gb|AAM20541.1|
           putative vacuolar proton-ATPase subunit [Arabidopsis
           thaliana]
          Length = 821

 Score = 74.7 bits (182), Expect(2) = 4e-16
 Identities = 31/49 (63%), Positives = 44/49 (89%)
 Frame = +2

Query: 242 EVGLLQFKDLNTDKSAFQRTFANQVKRCDEMARRLRFFADQVAKEGITP 388
           ++GL+QFKDLN++KS FQRT+A Q+KRC EMAR++RFF +Q++K G+TP
Sbjct: 44  DLGLVQFKDLNSEKSPFQRTYAAQIKRCGEMARKIRFFKEQMSKAGVTP 92

 Score = 30.4 bits (67), Expect(2) = 4e-16
 Identities = 14/24 (58%), Positives = 19/24 (78%)
 Frame = +1

Query: 154 ELGRSEEMGLVRLLIPAESAHETV 225
           +L RSE M LV++++P ESAH TV
Sbjct: 16  DLMRSEPMQLVQVIVPMESAHLTV 39

>pir||T06068 probable proton pump F19H22.180 - Arabidopsis thaliana
           gi|4539327|emb|CAB38828.1| putative proton pump
           [Arabidopsis thaliana] gi|7270891|emb|CAB80571.1|
           putative proton pump [Arabidopsis thaliana]
          Length = 843

 Score = 71.6 bits (174), Expect(2) = 2e-15
 Identities = 30/47 (63%), Positives = 42/47 (88%)
 Frame = +2

Query: 242 EVGLLQFKDLNTDKSAFQRTFANQVKRCDEMARRLRFFADQVAKEGI 382
           ++GL+QFKDLN++KS FQRT+A Q+KRC EMAR++RFF DQ++K G+
Sbjct: 43  DLGLVQFKDLNSEKSPFQRTYAAQIKRCGEMARKIRFFRDQMSKAGV 89

 Score = 31.6 bits (70), Expect(2) = 2e-15
 Identities = 15/24 (62%), Positives = 19/24 (78%)
 Frame = +1

Query: 154 ELGRSEEMGLVRLLIPAESAHETV 225
           +L RSE M LV+L++P ESAH TV
Sbjct: 15  DLMRSETMQLVQLIVPMESAHLTV 38



EST assemble image


clone accession position
1 CL11f03_r AV393786 1 455
2 MXL047e05_r BP095793 4 385




Chlamydomonas reinhardtii
Kazusa DNA Research Institute