Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000217A_C01 KCC000217A_c01
(843 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00056820.1| COG2115: Xylose isomerase [Thermobifida fusca] 58 2e-07
ref|XP_346988.1| protein tyrosine phosphatase, receptor type, F ... 53 4e-07
dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvir... 56 6e-07
gb|AAK63080.1| side tail fiber protein [Salmonella enterica subs... 41 8e-07
emb|CAC36006.1| bA11M20.1 (TATA box binding protein (TBP)-associ... 56 8e-07
>ref|ZP_00056820.1| COG2115: Xylose isomerase [Thermobifida fusca]
Length = 754
Score = 58.2 bits (139), Expect = 2e-07
Identities = 48/154 (31%), Positives = 66/154 (42%), Gaps = 1/154 (0%)
Frame = -3
Query: 613 PEPADVSPCRAPAPAPTAVAAGSTPRPDTAVPTRPLPTSPSGVPAGSMLSPCCKVNRRRG 434
PEP SP + P P P A + S PD + P+ T P+ P + S N
Sbjct: 144 PEPPSPSP-KNPPPTPPAPSPDSPTPPDASSPSSAPSTQPASSPPEPLRSASPSKNSTNS 202
Query: 433 LSR*CTDCCTNSAGCGCVQAAAAEAPLLPDGPTAAPVCTCDPLTSPPPTAAAASAATCKA 254
S +A C + A P P P AA + +P TSPPPT A S+ C A
Sbjct: 203 PS---PHPPAPAASSSCPTSTANAPPTCPT-PPAASTASPEP-TSPPPTWPAPSSKACSA 257
Query: 253 LGAAPAGSSALKAGAACI-ACVAAAPALFSAAPA 155
P+ S+ K + + + AAAPA +AP+
Sbjct: 258 ASLTPSTPSSTKVSPSTVSSSSAAAPAPPQSAPS 291
Score = 38.1 bits (87), Expect = 0.18
Identities = 35/137 (25%), Positives = 45/137 (32%), Gaps = 19/137 (13%)
Frame = -3
Query: 616 SPEPADVSPCRAPAP-------------------APTAVAAGSTPRPDTAVPTRPLPTSP 494
SP PA SP A +P +P A+ P P A P P T+P
Sbjct: 13 SPSPASPSPNSAGSPNTNPTTPPEPKASSCPTTGSPNALPKPPNPSPTAATPPAPATTTP 72
Query: 493 SGVPAGSMLSPCCKVNRRRGLSR*CTDCCTNSAGCGCVQAAAAEAPLLPDGPTAAPVCTC 314
P G SP +A E+P P A+P
Sbjct: 73 PPTPTGPTCSP----------------------SPSAANSAPRESPPPPKSSAASP---- 106
Query: 313 DPLTSPPPTAAAASAAT 263
P SPP T++A + AT
Sbjct: 107 -PPNSPPSTSSAPAPAT 122
>ref|XP_346988.1| protein tyrosine phosphatase, receptor type, F [Rattus norvegicus]
Length = 197
Score = 53.1 bits (126), Expect = 5e-06
Identities = 45/129 (34%), Positives = 59/129 (44%), Gaps = 4/129 (3%)
Frame = +3
Query: 3 TVAVFSFAAGAAHASVQRSESAARLPDVHASQSSGAADWNTVQLPWSVLHAAGAALNNAG 182
T A + AA AA A+ + +AA A ++ AA + AA A AG
Sbjct: 45 TTAAAAGAAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAG 104
Query: 183 AAATQAMHAAPAFSALLPAGAAPRALHVA----AEAAAAVGGGEVSGSQVHTGAAVGPSG 350
AAA A A A ++ AGAA A A A A AA G S + GAA P+
Sbjct: 105 AAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAA 164
Query: 351 SSGASAAAA 377
++GA+AAAA
Sbjct: 165 AAGAAAAAA 173
Score = 51.2 bits (121), Expect = 2e-05
Identities = 56/213 (26%), Positives = 77/213 (35%), Gaps = 1/213 (0%)
Frame = +3
Query: 6 VAVFSFAAGAAHASVQRSESAARLPDVHASQSSGAADWNTVQLPWSVLHAAGAALNNAGA 185
+AV + A AA A + +AA A+ ++ T AA AA A A
Sbjct: 6 LAVQAAAGAAAPAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAA 65
Query: 186 AATQAMHAAPAFSALLPAGAAPRALHVAAEAAAA-VGGGEVSGSQVHTGAAVGPSGSSGA 362
AA A A A +A AGAA A A AA A G + + GAA ++GA
Sbjct: 66 AAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAAEASEAAAGA 125
Query: 363 SAAAAWTQPQPALFVQQSVHQRESPRRLLTLQQGLSIEPAGTPEGLVGNGLVGTAVSGRG 542
+AAAA + T G A +G
Sbjct: 126 AAAAA--------------------------AAAAAAGATATAAAAAGAASAAAAAAGAA 159
Query: 543 VLPAATAVGAGAGARHGDTSAGSGLSSSSTPQG 641
PAA A GA A A +A + ++++ P G
Sbjct: 160 EAPAA-AAGAAAAAAAAAAAAAAAAATAAVPAG 191
Score = 50.4 bits (119), Expect = 4e-05
Identities = 48/135 (35%), Positives = 64/135 (46%), Gaps = 3/135 (2%)
Frame = +3
Query: 3 TVAVFSFAAGAAHASVQRSESAARLPDVHASQSSGAADWNTVQLPWSVLHAAGAALNNAG 182
T A + AAGAA + + +AA A+ ++GAA T + AA AA A
Sbjct: 60 TTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAA--TAEAAAGAAAAAAAAAGAAE 117
Query: 183 AAATQAMHAAPAFSALLPAGA---APRALHVAAEAAAAVGGGEVSGSQVHTGAAVGPSGS 353
A+ A AA A +A AGA A A A+ AAAA G E + GAA + +
Sbjct: 118 ASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAAA--AGAAAAAAAA 175
Query: 354 SGASAAAAWTQPQPA 398
+ A+AAAA T PA
Sbjct: 176 AAAAAAAAATAAVPA 190
Score = 48.1 bits (113), Expect = 2e-04
Identities = 41/124 (33%), Positives = 51/124 (41%)
Frame = -3
Query: 376 AAAAEAPLLPDGPTAAPVCTCDPLTSPPPTAAAASAATCKALGAAPAGSSALKAGAACIA 197
AAAA A AA T T+ AAA+AA AA A +A AGAA A
Sbjct: 21 AAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAAATAGAAAAA 80
Query: 196 CVAAAPALFSAAPAACNTDQGSCTVFQSAAPDDWLACTSGRRAADSDRWTLACAAPAANE 17
A A A +AA A T + + +AA A A+++ A AA AA
Sbjct: 81 AAAGAAATAAAAAGAAATAEAAAGAAAAAA-----AAAGAAEASEAAAGAAAAAAAAAAA 135
Query: 16 KTAT 5
AT
Sbjct: 136 AGAT 139
Score = 48.1 bits (113), Expect(2) = 4e-07
Identities = 44/156 (28%), Positives = 57/156 (36%), Gaps = 4/156 (2%)
Frame = -3
Query: 577 APAPTAVAAGSTPRPDTAVPTRPLPTSPSGVPAGSMLSPCCKVNRRRGLSR*----CTDC 410
A A TA AAG+ A + + AG+ + + +
Sbjct: 42 AAATTAAAAGAAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEA 101
Query: 409 CTNSAGCGCVQAAAAEAPLLPDGPTAAPVCTCDPLTSPPPTAAAASAATCKALGAAPAGS 230
+A A AAEA G AA + AAAA AA+ A A A +
Sbjct: 102 AAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEA 161
Query: 229 SALKAGAACIACVAAAPALFSAAPAACNTDQGSCTV 122
A AGAA A AAA A +AA AA S T+
Sbjct: 162 PAAAAGAAAAAAAAAAAAAAAAATAAVPAGAASATM 197
Score = 47.8 bits (112), Expect = 2e-04
Identities = 56/194 (28%), Positives = 71/194 (35%)
Frame = -3
Query: 583 APAPAPTAVAAGSTPRPDTAVPTRPLPTSPSGVPAGSMLSPCCKVNRRRGLSR*CTDCCT 404
A APA TA AA + A + +G A + + +
Sbjct: 14 AAAPAGTAAAAAAA----AAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAG 69
Query: 403 NSAGCGCVQAAAAEAPLLPDGPTAAPVCTCDPLTSPPPTAAAASAATCKALGAAPAGSSA 224
+A G AAAA A T + AA A+AA A GAA A +A
Sbjct: 70 AAATAGAAAAAAAAGAAATAAAAAGAAATAE-------AAAGAAAAAAAAAGAAEASEAA 122
Query: 223 LKAGAACIACVAAAPALFSAAPAACNTDQGSCTVFQSAAPDDWLACTSGRRAADSDRWTL 44
A AA A AAA A +AA AA + + AP A +G AA +
Sbjct: 123 AGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAP----AAAAGAAAAAA----A 174
Query: 43 ACAAPAANEKTATV 2
A AA AA TA V
Sbjct: 175 AAAAAAAAAATAAV 188
Score = 42.4 bits (98), Expect = 0.010
Identities = 37/114 (32%), Positives = 51/114 (44%)
Frame = +3
Query: 24 AAGAAHASVQRSESAARLPDVHASQSSGAADWNTVQLPWSVLHAAGAALNNAGAAATQAM 203
A AA A + AA A+ ++GAA+ + + AA AA AGA AT A
Sbjct: 87 ATAAAAAGAAATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAA--AGATATAAA 144
Query: 204 HAAPAFSALLPAGAAPRALHVAAEAAAAVGGGEVSGSQVHTGAAVGPSGSSGAS 365
A A +A AGAA A AAAA + + T A P+G++ A+
Sbjct: 145 AAGAASAAAAAAGAAEAPAAAAGAAAAAAAAAAAAAAAAATAAV--PAGAASAT 196
Score = 42.0 bits (97), Expect = 0.013
Identities = 44/171 (25%), Positives = 61/171 (34%), Gaps = 5/171 (2%)
Frame = +3
Query: 132 LPWSVLHAAGAALNNAGAAATQAMHAAPAFSALLPAGAAPRALHVAAEAAAAVGGGEVSG 311
L +V AAGAA AAA A AA A +A A A AA AAAA +
Sbjct: 4 LQLAVQAAAGAAAPAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAA 63
Query: 312 SQVHTGAAVGPSGSSGASAAAAWTQPQPALFVQQSVHQRESPRRLLTLQQGLSIEPAGTP 491
+ GAA ++ A+AA A A + G + E +
Sbjct: 64 AAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAG-AAEASEAA 122
Query: 492 EGLVGNGLVGTAVSG-----RGVLPAATAVGAGAGARHGDTSAGSGLSSSS 629
G A +G AA+A A AGA +A ++++
Sbjct: 123 AGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAAAAGAAAAAA 173
Score = 41.2 bits (95), Expect = 0.022
Identities = 53/197 (26%), Positives = 72/197 (35%)
Frame = +2
Query: 194 AGYARSSSLQCAAACWCCAQGFARRC*SGGGCGRR*GQRVASAHGRGCGAVWQ*WGLRCC 373
A A +++ AAA A G A + G +A GA
Sbjct: 21 AAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAA------ATA 74
Query: 374 RLDAAAASAIRAAVGASAGEPPAPVDLAARAQH*ASRYSGRACR*RPCWHSRVWTRCAAS 553
AAAA+A AA A+A A + AA A A+ +G A + AA+
Sbjct: 75 GAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAA----EASEAAAGAAAAAA 130
Query: 554 CYGGGGWSWGTAWRYVSGLRTQQQQHTAGAGAAPTSATAATAADADVSEASAAAASIPEH 733
+ TA A AGAA +A AA AA+A + A AAAA+
Sbjct: 131 AAAAAAGATATA--------------AAAAGAASAAAAAAGAAEAPAAAAGAAAAAAAAA 176
Query: 734 ARISSFDTLAVTAAAAA 784
A ++ A A AA
Sbjct: 177 AAAAAAAATAAVPAGAA 193
Score = 40.8 bits (94), Expect = 0.028
Identities = 41/126 (32%), Positives = 51/126 (39%), Gaps = 6/126 (4%)
Frame = -3
Query: 382 VQAAAAEAPLLPDGPTAAPVCTCDPLTSPPPTAAAASAATCKALGAAPAGSSALKAGAAC 203
VQAAA A P G AA + AA +AAT A A A ++A AA
Sbjct: 8 VQAAAGAAA--PAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAA 65
Query: 202 IACVAAAPALFSAAPAACN------TDQGSCTVFQSAAPDDWLACTSGRRAADSDRWTLA 41
A AAA A +AA AA G+ ++AA A + A S+ A
Sbjct: 66 AAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAAEASEAAAGA 125
Query: 40 CAAPAA 23
AA AA
Sbjct: 126 AAAAAA 131
Score = 40.0 bits (92), Expect = 0.048
Identities = 44/142 (30%), Positives = 54/142 (37%)
Frame = -1
Query: 783 AAAAAVTARVSKLLMRACSGMEAAAAEASETSASAAVAAVALVGAAPAPAVCCCC*VLSP 604
AAAAA A + A +G AAAA A+ +A+AA A A GAA A A +
Sbjct: 32 AAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAA 91
Query: 603 LTYRHAVPQLQPPPP*QLAAHLVQTRLCQQGRYRQALPEYLLAQC*ALAARSTGAGGSPA 424
A + AA G A A A AA + A G+ A
Sbjct: 92 AAGAAATA--------EAAAGAAAAAAAAAG---AAEASEAAAGAAAAAAAAAAAAGATA 140
Query: 423 DAPTAARIALAAAASRRQQRRP 358
A AA A AAAA+ P
Sbjct: 141 TAAAAAGAASAAAAAAGAAEAP 162
Score = 39.3 bits (90), Expect = 0.082
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Frame = +3
Query: 9 AVFSFAAGAAHASVQRSESAARLPDVHASQSSGAADWNTVQLPWSVLHAAGAALNNAGAA 188
A + AAGAA + + +AA + ++ AA + + AA AA A AA
Sbjct: 77 AAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAA 136
Query: 189 ATQAMHAAPAFSALLPAGAAPRALHVAAEA-AAAVGGGEVSGSQVHTGAAVGPSGSSGAS 365
A AA A +A A AA AAEA AAA G + + AA + + A
Sbjct: 137 GATATAAAAAGAASAAAAAAG-----AAEAPAAAAGAAAAAAAAAAAAAAAAATAAVPAG 191
Query: 366 AAAA 377
AA+A
Sbjct: 192 AASA 195
Score = 37.4 bits (85), Expect = 0.31
Identities = 44/142 (30%), Positives = 57/142 (39%), Gaps = 1/142 (0%)
Frame = +2
Query: 383 AAAASAIRAAVGASAGEPPAPVDLAARAQH*ASRYSGRACR*RPCWHSRVWTRCAASCYG 562
AAAA+A AA A+A A AA A A+ + T AA+
Sbjct: 23 AAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAA--------------TTAAAAAAA 68
Query: 563 GGGWSWGTAWRYVSGLRTQQQQHTAGAGAAPTSATAA-TAADADVSEASAAAASIPEHAR 739
G + G A A AGAA T+A AA AA A+ + +AAAA+ A
Sbjct: 69 GAAATAGAA------------AAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAA 116
Query: 740 ISSFDTLAVTAAAAALHGVLGS 805
+S AAAAA G+
Sbjct: 117 EASEAAAGAAAAAAAAAAAAGA 138
Score = 36.2 bits (82), Expect = 0.69
Identities = 32/87 (36%), Positives = 38/87 (42%), Gaps = 4/87 (4%)
Frame = -3
Query: 271 AATCKALGAAPAGSSALKAGAACIACVAAAPALFSA----APAACNTDQGSCTVFQSAAP 104
A A AAPAG++A A AA A AAA A A A AA + +AA
Sbjct: 7 AVQAAAGAAAPAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAA 66
Query: 103 DDWLACTSGRRAADSDRWTLACAAPAA 23
A T+G AA + A AA AA
Sbjct: 67 AAGAAATAGAAAAAAAAGAAATAAAAA 93
Score = 36.2 bits (82), Expect = 0.69
Identities = 40/139 (28%), Positives = 55/139 (38%)
Frame = +2
Query: 377 LDAAAASAIRAAVGASAGEPPAPVDLAARAQH*ASRYSGRACR*RPCWHSRVWTRCAASC 556
+ AAA +A A A+A A AA A + + A + T AA+
Sbjct: 8 VQAAAGAAAPAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAA 67
Query: 557 YGGGGWSWGTAWRYVSGLRTQQQQHTAGAGAAPTSATAATAADADVSEASAAAASIPEHA 736
G + A +G A A AA + AATA A + A+AAAA+ A
Sbjct: 68 AGAAATAGAAAAAAAAG---------AAATAAAAAGAAATAEAAAGAAAAAAAAAGAAEA 118
Query: 737 RISSFDTLAVTAAAAALHG 793
++ A AAAAA G
Sbjct: 119 SEAAAGAAAAAAAAAAAAG 137
Score = 33.1 bits (74), Expect = 5.9
Identities = 22/50 (44%), Positives = 26/50 (52%)
Frame = -1
Query: 783 AAAAAVTARVSKLLMRACSGMEAAAAEASETSASAAVAAVALVGAAPAPA 634
AAAAA A + + AAAA A+E A+AA AA A AA A A
Sbjct: 131 AAAAAAGATATAAAAAGAASAAAAAAGAAEAPAAAAGAAAAAAAAAAAAA 180
Score = 28.5 bits (62), Expect(2) = 4e-07
Identities = 17/37 (45%), Positives = 19/37 (50%)
Frame = -1
Query: 750 KLLMRACSGMEAAAAEASETSASAAVAAVALVGAAPA 640
KLL A AAA A +A+AA AA A AA A
Sbjct: 2 KLLQLAVQAAAGAAAPAGTAAAAAAAAAAAAAAAAAA 38
>dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvirus 1]
Length = 3326
Score = 56.2 bits (134), Expect = 6e-07
Identities = 64/201 (31%), Positives = 74/201 (35%), Gaps = 6/201 (2%)
Frame = -3
Query: 607 PADVSPCRAPAPAPTAVAAGSTPR---PDTAVPTRPLPTSPSGVPAGSMLS--PCCKVNR 443
PA SP + P A GS P P P PTSP+ P + S P
Sbjct: 2768 PAPSSPLQRPRRRAARPAVGSLTNLADPHPPGPETPTPTSPTANPHATTASATPAPPPVA 2827
Query: 442 RRGLSR*CTDCCTNSAGCGCVQAAAAEAPLLPDGPTAAPVCTCDPLTSPPPTAAAASAA- 266
G +R + +A+A AP P P AAP P P A AA AA
Sbjct: 2828 ATGPTRPTSPATPTPTVAAAGRASAPPAPAAPAAP-AAPAAPAAPAAPAAPAAPAAPAAP 2886
Query: 265 TCKALGAAPAGSSALKAGAACIACVAAAPALFSAAPAACNTDQGSCTVFQSAAPDDWLAC 86
A AAPA +A A AA A A A AAPAA AAP A
Sbjct: 2887 AAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAAVPAAP----AA 2942
Query: 85 TSGRRAADSDRWTLACAAPAA 23
+ A + A AAPAA
Sbjct: 2943 PAAPAAPAAPAAPAAPAAPAA 2963
Score = 54.7 bits (130), Expect = 2e-06
Identities = 56/177 (31%), Positives = 64/177 (35%), Gaps = 7/177 (3%)
Frame = -3
Query: 613 PEPADVSPCRAPAPAPTAVAAGSTPRPDTAV------PTRPLPTSPSGVPAGSMLSPCCK 452
P P +P +P P A A +TP P PT P +P+ AG +P
Sbjct: 2798 PGPETPTPT-SPTANPHATTASATPAPPPVAATGPTRPTSPATPTPTVAAAGRASAPPAP 2856
Query: 451 VNRRRGLSR*CTDCCTNSAGCGCVQAAAAEAPLLPDGPTAAPVCTCDPLTSPPPTAAAAS 272
+A AA AP P P AAP P P A AA
Sbjct: 2857 A--------------APAAPAAPAAPAAPAAPAAPAAP-AAPAAPAAPAAPAAPAAPAAP 2901
Query: 271 AA-TCKALGAAPAGSSALKAGAACIACVAAAPALFSAAPAACNTDQGSCTVFQSAAP 104
AA A AAPA +A A AA A A APA AAPAA AAP
Sbjct: 2902 AAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAAVPAAPAAPAAPAAPAAPAAPAAP 2958
Score = 47.4 bits (111), Expect = 3e-04
Identities = 52/159 (32%), Positives = 58/159 (35%), Gaps = 5/159 (3%)
Frame = -3
Query: 613 PEPADVSPCRAPAPA---PTAVAAGSTPRPDT-AVPTRPLPTSPSGVPAGSMLSPCCKVN 446
P A P R +PA PT AAG P A P P + PA +P
Sbjct: 2824 PPVAATGPTRPTSPATPTPTVAAAGRASAPPAPAAPAAPAAPAAPAAPAAPA-APAAPAA 2882
Query: 445 RRRGLSR*CTDCCTNSAGCGCVQAAAAEAPLLPDGPTAAPVCTCDPLTSPPPTAAAASAA 266
+A AA AP P P AAP P P A AA AA
Sbjct: 2883 P-----------AAPAAPAAPAAPAAPAAPAAPAAP-AAPAAPAAPAAPAAPAAPAAPAA 2930
Query: 265 TCKA-LGAAPAGSSALKAGAACIACVAAAPALFSAAPAA 152
A + AAPA +A A AA A A A AAPAA
Sbjct: 2931 PAPAAVPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAA 2969
Score = 39.3 bits (90), Expect = 0.082
Identities = 47/183 (25%), Positives = 59/183 (31%), Gaps = 3/183 (1%)
Frame = -3
Query: 643 GPCGVLLLLSPEPADVSPCRAPAP-APTAVAAGSTPRPDTAVPTRPLPTSPSGVPA-GSM 470
GP +P P + RA AP AP A AA + P A P +P+ A +
Sbjct: 2830 GPTRPTSPATPTPTVAAAGRASAPPAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAP 2889
Query: 469 LSPCCKVNRRRGLSR*CTDCCTNSAGCGCVQAAAAEAPLLPDGPTAAPVCTCDPLTSPPP 290
+P + A A AA A P A P P P
Sbjct: 2890 AAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAAVPAAPAAPAAPAAP 2949
Query: 289 TAAAASAA-TCKALGAAPAGSSALKAGAACIACVAAAPALFSAAPAACNTDQGSCTVFQS 113
A AA AA A AAPA + A A A + +PA T S
Sbjct: 2950 AAPAAPAAPAAPAAPAAPAAPAPAAVPVVVPAPTATLTATTTTSPAPAATPASPVPTPTS 3009
Query: 112 AAP 104
+ P
Sbjct: 3010 SLP 3012
Score = 37.0 bits (84), Expect = 0.41
Identities = 47/179 (26%), Positives = 63/179 (34%), Gaps = 28/179 (15%)
Frame = -3
Query: 661 ACRRSPGPCGVLLLLSPEPADVSPCRAPAPAPTAVAAGSTPRPDTAVPTRP--------- 509
A +P P V +++ A ++ +PAP A A P P +++PT P
Sbjct: 2965 AAPAAPAPAAVPVVVPAPTATLTATTTTSPAPAATPASPVPTPTSSLPTPPSKPPAFFQP 3024
Query: 508 -LPTSPSGVPAGSM-----LSPCCKVNR------RRGLSR*CTDCCTNSAGCGCVQAAAA 365
L T S P G P V R L+R T S + A
Sbjct: 3025 SLATGGSVAPGGDFRRRAPSRPTAAVPAAPSRPPARRLARPAVSRSTESFALPPDELARP 3084
Query: 364 EAPLLPDGPT---AAPV----CTCDPLTSPPPTAAAASAATCKALGAAPAGSSALKAGA 209
P P PT APV +P PP+ AA A A G + G A + GA
Sbjct: 3085 RTPEAPAPPTETEEAPVAERPAPPEPPQGRPPSPAAPDAGPAAASGPS-GGVPAPRLGA 3142
>gb|AAK63080.1| side tail fiber protein [Salmonella enterica subsp. enterica
serovar Hadar]
Length = 812
Score = 40.8 bits (94), Expect(2) = 8e-07
Identities = 56/203 (27%), Positives = 81/203 (39%)
Frame = +3
Query: 24 AAGAAHASVQRSESAARLPDVHASQSSGAADWNTVQLPWSVLHAAGAALNNAGAAATQAM 203
AAG A Q S A A ++GAA+ + Q S A +A ++AG A T+A
Sbjct: 126 AAGQASEQAQTSAGQASESATAAVNAAGAAEASATQAASS----AASAESSAGTATTKAG 181
Query: 204 HAAPAFSALLPAGAAPRALHVAAEAAAAVGGGEVSGSQVHTGAAVGPSGSSGASAAAAWT 383
A+ + A +A A AA +AAA S+ +T A+ +G S A+AAA+ T
Sbjct: 182 EASAS------AASADTARTAAAASAAAA-----KTSEENTDASRTAAGDSAAAAAASAT 230
Query: 384 QPQPALFVQQSVHQRESPRRLLTLQQGLSIEPAGTPEGLVGNGLVGTAVSGRGVLPAATA 563
Q + + G S A T E + S AA+
Sbjct: 231 AAQTS-----------------AARAGASETAAKTSETQAASSAGDAGASATAA--AASE 271
Query: 564 VGAGAGARHGDTSAGSGLSSSST 632
A A A TS + +S+ST
Sbjct: 272 KAATASAAEAKTSETNAATSAST 294
Score = 37.4 bits (85), Expect = 0.31
Identities = 47/170 (27%), Positives = 67/170 (38%), Gaps = 10/170 (5%)
Frame = +3
Query: 24 AAGAAHASVQRSESAARLPDVHASQSSGAADWNTVQLPWSVLHAAGAALNNAGAAATQAM 203
AA A+ A+ + SE A S+ AA + S A GA+ A + TQA
Sbjct: 196 AAAASAAAAKTSEENTDASRTAAGDSAAAAAASATAAQTSAARA-GASETAAKTSETQAA 254
Query: 204 HAAPAFSALLPAGAAPR--ALHVAAEAAAAVGGGEVSGSQVHTGAAVGPSGSSGASAAAA 377
+A A A AA A AAEA + S S A S +S AS AA
Sbjct: 255 SSAGDAGASATAAAASEKAATASAAEAKTSETNAATSASTSAASATAASSSASEASTHAA 314
Query: 378 WTQPQPALFVQQS-------VHQRESPRRLLTLQQGLSIEPAG-TPEGLV 503
+ +L Q S ++ +R + +S+E A T +G+V
Sbjct: 315 ASDTSASLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTKKGIV 364
Score = 37.4 bits (85), Expect = 0.31
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 20/153 (13%)
Frame = -3
Query: 406 TNSAGCGCVQAAAAEAPLLPDGPTAAPVCTCDPLTSPPPTAA------AASAATCKALGA 245
T AG AA+A+ +AA T + T TAA AA++AT A
Sbjct: 177 TTKAGEASASAASADTARTAAAASAAAAKTSEENTDASRTAAGDSAAAAAASATAAQTSA 236
Query: 244 APAG--------------SSALKAGAACIACVAAAPALFSAAPAACNTDQGSCTVFQSAA 107
A AG SSA AGA+ A A+ A ++A A ++ + T ++A
Sbjct: 237 ARAGASETAAKTSETQAASSAGDAGASATAAAASEKAATASAAEAKTSETNAATSASTSA 296
Query: 106 PDDWLACTSGRRAADSDRWTLACAAPAANEKTA 8
A +S A+ + A+ AA TA
Sbjct: 297 ASATAASSSASEASTHAAASDTSASLAAQSSTA 329
Score = 34.7 bits (78), Expect(2) = 8e-07
Identities = 21/49 (42%), Positives = 29/49 (58%)
Frame = +2
Query: 632 TAGAGAAPTSATAATAADADVSEASAAAASIPEHARISSFDTLAVTAAA 778
T A +A TSA +ATAA + SEAS AA+ A +++ + A AAA
Sbjct: 286 TNAATSASTSAASATAASSSASEASTHAAASDTSASLAAQSSTAAGAAA 334
>emb|CAC36006.1| bA11M20.1 (TATA box binding protein (TBP)-associated factor, RNA
polymerase II, C1, 130kD) [Homo sapiens]
Length = 628
Score = 55.8 bits (133), Expect = 8e-07
Identities = 65/249 (26%), Positives = 85/249 (34%), Gaps = 28/249 (11%)
Frame = -3
Query: 664 SACRRSPGPCGVLLLLSPEPADVSPCRAPAPAPTAVAAGSTPRPDTAVPTRPLPTSPSGV 485
SA +P P + PEPA P + PA A AG P P P P P+G
Sbjct: 133 SAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGP 192
Query: 484 PAGSMLSPCCKVNRRRGLSR*CTDCCTNSAGC-----------------GCVQAAAAEAP 356
A L+ + + N V AAA AP
Sbjct: 193 GAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAP 252
Query: 355 LLPDGPTAAPVCTCDPLTSPPPTAAAAS--------AATCKALGAAPAGSSALKAGAACI 200
P P AAP PPP A A+ A A A P ++A G+
Sbjct: 253 AAP-SPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGS--- 308
Query: 199 ACVAAAPALFSAAPAACNTDQGSCTVFQSAAPDDWLACTSGRR---AADSDRWTLACAAP 29
A A APA + PA + G +AAP + S +R AA TLA + P
Sbjct: 309 AGAAPAPAPAAGGPAGVSGQPGPGAA--AAAPAPGVKAESPKRVVQAAPPAAQTLAASGP 366
Query: 28 AANEKTATV 2
A+ + +
Sbjct: 367 ASTAASMVI 375
Score = 44.7 bits (104), Expect = 0.002
Identities = 56/188 (29%), Positives = 65/188 (33%), Gaps = 8/188 (4%)
Frame = -3
Query: 643 GPCGVLLLLSPEPADVSPCRAPAPAPTAVAAGSTPRPDTAVPTRPLPTSPSGVPAGSMLS 464
GP L P P + AP PA AVAAG P P A P +P + AG
Sbjct: 118 GPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAG--PEPAPAGPAKPAGPAALAARAGPGPG 175
Query: 463 PCCKVNRRRGLSR*CTDCCTNSAGCGCVQAAAAEAPLLPDGPTAAPVCT------CDPLT 302
P G + AG G Q A LL AAP + L
Sbjct: 176 PGPGPGPGPGPGK--------PAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLP 227
Query: 301 SPPPTAAAASAATCKALGAA--PAGSSALKAGAACIACVAAAPALFSAAPAACNTDQGSC 128
P P A T +GAA PA ++ A A AAAP APA G
Sbjct: 228 LPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHP 287
Query: 127 TVFQSAAP 104
+AAP
Sbjct: 288 AGPPTAAP 295
Score = 44.3 bits (103), Expect = 0.003
Identities = 63/218 (28%), Positives = 85/218 (38%), Gaps = 18/218 (8%)
Frame = +3
Query: 177 AGAAATQAMHAAPAFSALLPAGAA--PRALHVAAEAAAAVGGGEVSGSQVHTGAAVGPSG 350
A AAA APA A P A P A AAA GG + AA GP+G
Sbjct: 265 APAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAG 324
Query: 351 SSG-ASAAAAWTQPQPALFVQQSVHQRESPRRLLTLQQGLSIEPAGTPEGLVGNGLVGTA 527
SG AA P P + + ESP+R++ + PA + L +G TA
Sbjct: 325 VSGQPGPGAAAAAPAPGV-------KAESPKRVVQ-----AAPPAA--QTLAASGPASTA 370
Query: 528 VS------GRGVLPAATAVGAGA-GARHGDTSAGSGLSSSSTPQGPGLRLQALQLQLQLT 686
S +G LP+ AV A G G +G + S + P ++ L T
Sbjct: 371 ASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPT 430
Query: 687 QMSLRLQQQRLPFQN--------TPASAALIPSQSQQL 776
++ RL Q P QN P L+ S++ QL
Sbjct: 431 VLAPRLPQ---PPQNPTNIQNFQLPPGMVLVRSENGQL 465
Score = 42.7 bits (99), Expect = 0.007
Identities = 64/227 (28%), Positives = 75/227 (32%), Gaps = 18/227 (7%)
Frame = -3
Query: 649 SPGPCGVLLLLSPEPADVSPCRAPAPAPTAVA---AGSTPRPDTAVPTRPLPTSPSGVPA 479
S P G PA+ +P AP P P A G RP P RPL + PA
Sbjct: 64 SGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPA 123
Query: 478 GSMLSPCCKVNRRRGLSR*CTDCCTNSAG-CGCVQAAAAEAPLLPDGPTAAPVCTCDPLT 302
+ P SAG C V AAAA A GP AP P
Sbjct: 124 AKLRPP-----------------PEGSAGSCAPVPAAAAVAA----GPEPAPAGPAKP-A 161
Query: 301 SPPPTAAAASAATCKALGAAPAGSSALKAGAACIACVAAAPALF----SAAPAACNTDQG 134
P AA A G P AG + + AL +AAPA + G
Sbjct: 162 GPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNG 221
Query: 133 SCTVF---QSAAPDDWL-------ACTSGRRAADSDRWTLACAAPAA 23
+ + AAP + A AA S A AAPAA
Sbjct: 222 PAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAA 268
Score = 36.2 bits (82), Expect = 0.69
Identities = 45/139 (32%), Positives = 55/139 (39%), Gaps = 5/139 (3%)
Frame = +3
Query: 246 APRALHVAAEAAAAVGGGEVSGSQVHTGAAVGPSGSSGASAAAAWTQPQPALFVQQSVHQ 425
APR V A AA A+G VSGS A + + GA AA P Q
Sbjct: 44 APRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQ 103
Query: 426 R---ESPRRLLTLQQGLSIEPAG--TPEGLVGNGLVGTAVSGRGVLPAATAVGAGAGARH 590
R SPRR L PAG P + G+A S V PAA AV AG
Sbjct: 104 RPGPPSPRRPLV--------PAGPAPPAAKLRPPPEGSAGSCAPV-PAAAAVAAGPEPAP 154
Query: 591 GDTSAGSGLSSSSTPQGPG 647
+ +G ++ + GPG
Sbjct: 155 AGPAKPAGPAALAARAGPG 173
