KCC000208A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000208A_C01 KCC000208A_c01
CTTGTGACTTTTGACCTGCAGTTTCCCTGCTGTAACGTCTCCACCTCTTAACCTTTCGCT
AGGAGTAGGCGGGCGGAGCAGCGCCATGCCCCCCAGTCTCAAGAACGGCTTCCAATAGGC
ATGGTGCTAGTGTTATGGCCGTGTATCTTGTCTCAGTGCGCCTCCCTACTGGAGAGGGCG
TCTACCATGGGGTGACTCTTGAGCCCTATGTGCTAGTCAAGCGCGGCGAGGCGACGCTCA
ATGCGGGAGGGACATCCCCGAGGAGGGCGCTCCGGAGGGTCAGTTCCAGCTGCGTGCACG
CTGGTACCGCAGCACTCTACCGCGTGGAGGAGCAGTGTGCAGTGTGCACCCGGACAAGGA
GGCCAGCCTGCAGTGCGTAGTCTGCACGAAATGCCGTGTGGCCACGCACCTGAGCTACCA
CTGCTCGGTGGAGTGCCTCAAAAGCCACTGGCACTTGCATCGGGAGTACCACAAGCAGCC
GCCCGCGAACGGAGGGACGCTGGAGAATGGTGTTGACGCGTCAAAGACGGCACACGGCAC
CAGCACTAGCGGGCTGGAGAGCTGGATTGAGGTGGGGCGCACCCGCGCGTACACCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000208A_C01 KCC000208A_c01
         (596 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP53738.1| putative chromaffin granule ATPase II homolog [Or...    84  1e-15
ref|NP_191417.1| endonuclease/exonuclease/phosphatase family [Ar...    79  4e-14
ref|NP_191415.2| endonuclease/exonuclease/phosphatase family [Ar...    79  4e-14
pir||T45676 hypothetical protein F14P22.150 - Arabidopsis thalia...    79  4e-14
gb|AAC82365.1| unknown [Myxococcus xanthus]                            41  0.015

>gb|AAP53738.1| putative chromaffin granule ATPase II homolog [Oryza sativa
           (japonica cultivar-group)]
          Length = 622

 Score = 84.0 bits (206), Expect = 1e-15
 Identities = 48/152 (31%), Positives = 67/152 (43%), Gaps = 37/152 (24%)
 Frame = +2

Query: 251 DIPEEGAPEGQFQLRARWYRSTLPRGGAVCSVHPDKEASLQCVVCTKCRVATHLSYHCSV 430
           D+PE    +G F +R RWYR    R  A+CSVHP ++A++QC+ C K ++    SYHCS 
Sbjct: 37  DVPEAAPADGYF-MRYRWYRIQSDRKVAICSVHPMEQATIQCLGCVKSKIPVAKSYHCSA 95

Query: 431 ECLKSHWHLHREYHKQPPANGGTLENGVDASKT--------------------------- 529
           +C    W  HR  H++  A+    ENG +  +                            
Sbjct: 96  KCFSDAWQHHRVLHER--ASSALNENGAEEEELFGRFGSTGSGVLSTTGSGSMSNLGQSP 153

Query: 530 ----------AHGTSTSGLESWIEVGRTRAYT 595
                       GT  +  E+W EVGRTR YT
Sbjct: 154 GLNNGPVPLYPSGTDKNSGETWYEVGRTRTYT 185

>ref|NP_191417.1| endonuclease/exonuclease/phosphatase family [Arabidopsis thaliana]
           gi|11282424|pir||T45678 hypothetical protein F14P22.170
           - Arabidopsis thaliana gi|6735375|emb|CAB68196.1|
           putative protein [Arabidopsis thaliana]
          Length = 605

 Score = 79.3 bits (194), Expect = 4e-14
 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
 Frame = +2

Query: 251 DIPEEGAPEGQFQLRARWYRSTLPRGGAVCSVHPDKEASLQCVVCTKCRVATHLSYHCSV 430
           D+PE    EG F LR RWYR    +   +CSVHP ++A+LQCV C+K R     SYHCS 
Sbjct: 37  DVPESAPLEGYF-LRYRWYRVQSDKKVTICSVHPTEQATLQCVFCSKRRSLVPKSYHCSP 95

Query: 431 ECLKSHWHLHREYHKQPPA-NGGTLENGVDASKTAHGTSTSG 553
           +C    W  HR  H++  A N    ++ ++ + +A   S +G
Sbjct: 96  KCFTDAWQHHRTLHERAAAENNANEDDDLNRNNSAGSGSLAG 137

>ref|NP_191415.2| endonuclease/exonuclease/phosphatase family [Arabidopsis thaliana]
           gi|18087604|gb|AAL58932.1|AF462845_1
           AT3g58560/F14P22_150 [Arabidopsis thaliana]
           gi|22137046|gb|AAM91368.1| At3g58560/F14P22_150
           [Arabidopsis thaliana]
          Length = 602

 Score = 79.3 bits (194), Expect = 4e-14
 Identities = 47/142 (33%), Positives = 71/142 (49%), Gaps = 27/142 (19%)
 Frame = +2

Query: 251 DIPEEGAPEGQFQLRARWYRSTLPRGGAVCSVHPDKEASLQCVVCTKCRVATHLSYHCSV 430
           D+PE    EG F L+ RW+R    +  A+CSVHP + A+LQC+ C K +V    SYHCS 
Sbjct: 37  DVPESAPLEGHF-LKYRWFRVQSDKKVAICSVHPSETATLQCLGCLKSKVPVAKSYHCST 95

Query: 431 ECLKSHWHLHREYHKQ--------------PPANGGTLENGVDASKTA--HGTST----- 547
           +C    W  HR  H++              P  N     +GV ++  +  +G+S+     
Sbjct: 96  KCFSDAWQHHRVLHERAASAATEGNDEEELPRLNSSGSGSGVLSTSVSLTNGSSSVYPSA 155

Query: 548 ------SGLESWIEVGRTRAYT 595
                 +G E+ +EVGR++ YT
Sbjct: 156 ITQKTGAGGETLVEVGRSKTYT 177

>pir||T45676 hypothetical protein F14P22.150 - Arabidopsis thaliana
           gi|6735373|emb|CAB68194.1| putative protein [Arabidopsis
           thaliana]
          Length = 597

 Score = 79.3 bits (194), Expect = 4e-14
 Identities = 47/142 (33%), Positives = 71/142 (49%), Gaps = 27/142 (19%)
 Frame = +2

Query: 251 DIPEEGAPEGQFQLRARWYRSTLPRGGAVCSVHPDKEASLQCVVCTKCRVATHLSYHCSV 430
           D+PE    EG F L+ RW+R    +  A+CSVHP + A+LQC+ C K +V    SYHCS 
Sbjct: 37  DVPESAPLEGHF-LKYRWFRVQSDKKVAICSVHPSETATLQCLGCLKSKVPVAKSYHCST 95

Query: 431 ECLKSHWHLHREYHKQ--------------PPANGGTLENGVDASKTA--HGTST----- 547
           +C    W  HR  H++              P  N     +GV ++  +  +G+S+     
Sbjct: 96  KCFSDAWQHHRVLHERAASAATEGNDEEELPRLNSSGSGSGVLSTSVSLTNGSSSVYPSA 155

Query: 548 ------SGLESWIEVGRTRAYT 595
                 +G E+ +EVGR++ YT
Sbjct: 156 ITQKTGAGGETLVEVGRSKTYT 177

>gb|AAC82365.1| unknown [Myxococcus xanthus]
          Length = 542

 Score = 40.8 bits (94), Expect = 0.015
 Identities = 45/155 (29%), Positives = 51/155 (32%), Gaps = 30/155 (19%)
 Frame = -1

Query: 596 GCTRGCAPPQSSSPAR*CW-CRVPSLTRQHHS-PASLRSRAAACGTPDASASGF*GTPPS 423
           G +R C PP+ S+P R C  C  P   R   S PA    R      P + ASG   T   
Sbjct: 102 GPSRRCGPPRKSTPTRCCTPCPAPPRCRARPSAPAPSAGRTCPTAGPSSCASGCCPTGRC 161

Query: 422 SGSSGAWPHGISCRLRTAGWPPCP-------------------GAHCTLLLHAVECCG-T 303
             + G  PHG      +    P P                   GA     L    CCG  
Sbjct: 162 GSAPGPTPHGAEPSPPSQSPSPAPASSGGRRRTHPRPARASAAGATAPACLPPPRCCGRP 221

Query: 302 SVHAAGTDPPER------PPR--GCPSRIERRLAA 222
               A T PP        PPR  G P R     AA
Sbjct: 222 GTGCARTAPPSTSASHPPPPRSPGTPPRASGSPAA 256



EST assemble image


clone accession position
1 LCL046h02_r AV628774 1 476
2 LCL048e05_r AV628889 1 274
3 LCL092g05_r AV631368 1 138
4 LCL028d09_r AV627552 11 560
5 LCL085h01_r AV630891 11 302
6 CL56h12_r AV396133 13 542
7 LCL029a07_r AV627585 13 550
8 MXL070f01_r BP097129 13 113
9 HCL001f09_r AV639601 13 331
10 LCL046f11_r AV628761 13 348
11 MXL033c09_r BP094957 13 366
12 CL43f09_r AV395544 13 494
13 CL10e07_r AV393699 13 406
14 HCL013b12_r AV640256 13 481
15 HCL007e02_r AV639934 13 472
16 MXL028c08_r BP094727 13 357
17 CL64c10_r AV396625 16 541
18 LCL069g07_r AV629949 23 425
19 CL18e01_r AV394053 25 512
20 LCL024f02_r AV627298 25 272
21 HCL068e02_r AV643370 26 575
22 LCL083h07_r AV630759 27 476
23 MXL098a03_r BP098721 32 446
24 LCL046a09_r AV628712 32 479
25 HCL021d02_r AV640726 32 425
26 MXL082a02_r BP097825 32 401
27 CL26b04_r AV394571 33 430
28 HCL079f01_r AV643982 33 515
29 LCL089f12_r AV631163 34 324
30 HCL084a08_r AV644213 40 526
31 HCL018e06_r AV640573 41 599
32 LCL086b05_r AV630906 41 558
33 CL45f09_r AV397800 41 525
34 LCL066e08_r AV629810 41 395
35 LCL015d01_r AV626781 44 585
36 CL18e03_r AV394084 46 485




Chlamydomonas reinhardtii
Kazusa DNA Research Institute