Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000194A_C01 KCC000194A_c01
(968 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07933 polyadenylate-binding protein RB47 precursor, chloro... 222 6e-57
ref|XP_309558.1| ENSANGP00000022280 [Anopheles gambiae] gi|21293... 158 1e-37
ref|NP_701596.1| polyadenylate-binding protein, putative [Plasmo... 156 4e-37
ref|XP_228576.1| hypothetical protein XP_228576 [Rattus norvegicus] 156 6e-37
pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Bindi... 155 7e-37
>pir||T07933 polyadenylate-binding protein RB47 precursor, chloroplast -
Chlamydomonas reinhardtii gi|2935338|gb|AAC39368.1|
poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 222 bits (566), Expect = 6e-57
Identities = 115/130 (88%), Positives = 116/130 (88%)
Frame = +1
Query: 577 MATTESSAPGGHHPAGPAPRWRTRSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAV 756
MATTESSAP P + SLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAV
Sbjct: 1 MATTESSAPAATTQPASTPLANS-SLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAV 59
Query: 757 TRRSLGYAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIK 936
TRRSLGYAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIK
Sbjct: 60 TRRSLGYAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIK 119
Query: 937 NLDKNIDAKA 966
NLDK IDAKA
Sbjct: 120 NLDKTIDAKA 129
Score = 50.4 bits (119), Expect = 4e-05
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Frame = +1
Query: 649 SLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADRA 828
++++ +L+K + L + FS+ G + S +V DA S GY +V++ D AADRA
Sbjct: 115 NIFIKNLDKTIDAKALHDTFSAFGKILSCKVATDA-NGVSKGYGFVHFE---DQAAADRA 170
Query: 829 METLNYHVVNGKPMRI--MWSHRDPSARKSGVGNIFIKNLDKNI 954
++T+N + GK + + D ++ N+F+KNL +I
Sbjct: 171 IQTVNQKKIEGKIVYVAPFQKRADRPRARTLYTNVFVKNLPADI 214
>ref|XP_309558.1| ENSANGP00000022280 [Anopheles gambiae] gi|21293041|gb|EAA05186.1|
ENSANGP00000022280 [Anopheles gambiae str. PEST]
Length = 650
Score = 158 bits (400), Expect = 1e-37
Identities = 78/124 (62%), Positives = 92/124 (73%)
Frame = +1
Query: 595 SAPGGHHPAGPAPRWRTRSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLG 774
SA H AP ++ SLYVGDL D+TEA LFE FSS GPV SIRVCRD +TRRSLG
Sbjct: 1 SAAAAHKMNPGAPNYQMASLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLG 60
Query: 775 YAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKNI 954
YAYVN+ P A+RA++T+N+ + G+P+RIMWS RDPS RKSGVGN+FIKNLDK I
Sbjct: 61 YAYVNFQ---QPADAERALDTMNFDPIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKI 117
Query: 955 DAKA 966
D KA
Sbjct: 118 DNKA 121
Score = 38.5 bits (88), Expect = 0.17
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Frame = +1
Query: 649 SLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADRA 828
++YV + +D+TE L ++F GP+ S RV +S G+ +V + P+ A+ A
Sbjct: 200 NVYVKNFGEDLTEEALRDMFEKFGPITSHRVM--TKDGKSRGFGFVAFEK---PEDAEEA 254
Query: 829 METLN-YHVVNGKPMRIMWSHR-----------------DPSARKSGVGNIFIKNLDKNI 954
++ LN + +GK + + + + + R GV N+++KNLD I
Sbjct: 255 VQKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGV-NLYVKNLDDTI 313
Query: 955 D 957
D
Sbjct: 314 D 314
>ref|NP_701596.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47
polyadenylate-binding protein, putative [Plasmodium
falciparum 3D7]
Length = 875
Score = 156 bits (395), Expect = 4e-37
Identities = 75/112 (66%), Positives = 94/112 (82%)
Frame = +1
Query: 631 PRWRTRSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDP 810
P + T SLYVGDL +DVTEA L+E+F++VG V+SIRVCRD+VTR+SLGYAYVNY++ D
Sbjct: 11 PSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLAD- 69
Query: 811 QAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKNIDAKA 966
A+RA++TLNY + G+P R+MWSHRDPS RKSG GNIF+KNLDK+ID KA
Sbjct: 70 --AERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKA 119
Score = 42.7 bits (99), Expect = 0.009
Identities = 22/76 (28%), Positives = 44/76 (56%)
Frame = +1
Query: 649 SLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADRA 828
+LY+ +L+ + + L ELF G + S +V RD +S G+ +V + S + A++A
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDE-KEQSKGFGFVCFAS---QEEANKA 506
Query: 829 METLNYHVVNGKPMRI 876
+ ++ ++NGKP+ +
Sbjct: 507 VTEMHLKIINGKPLYV 522
Score = 36.6 bits (83), Expect = 0.66
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +1
Query: 649 SLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADRA 828
+LYV + VTE L +LF+ G + S+ V D R+ + ++NY D ++A A
Sbjct: 194 NLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRK---FCFINY---ADAESAKNA 247
Query: 829 METLN 843
M+ LN
Sbjct: 248 MDNLN 252
>ref|XP_228576.1| hypothetical protein XP_228576 [Rattus norvegicus]
Length = 229
Score = 156 bits (394), Expect = 6e-37
Identities = 80/134 (59%), Positives = 97/134 (71%)
Frame = +1
Query: 565 LKSSMATTESSAPGGHHPAGPAPRWRTRSLYVGDLEKDVTEAQLFELFSSVGPVASIRVC 744
L +++A E A G G P + T SLYVGDL +VTE+ L+E FS GP+ SIR+C
Sbjct: 5 LAAALAAEEEEAAAGGSDDGN-PDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLC 63
Query: 745 RDAVTRRSLGYAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGN 924
RD VTRRSLGYAYVNY +D A RA+ET+N+ V+NG+P+RIMWS RDPS RKSGVGN
Sbjct: 64 RDKVTRRSLGYAYVNYQQPVD---AKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGN 120
Query: 925 IFIKNLDKNIDAKA 966
+FIKNL K ID KA
Sbjct: 121 VFIKNLGKTIDNKA 134
>pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna gi|6137351|pdb|1CVJ|B
Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding
Protein In Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure
Of The Poly(A)-Binding Protein In Complex With
Polyadenylate Rna gi|6137353|pdb|1CVJ|D Chain D, X-Ray
Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna gi|6137354|pdb|1CVJ|E
Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding
Protein In Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure
Of The Poly(A)-Binding Protein In Complex With
Polyadenylate Rna gi|6137356|pdb|1CVJ|G Chain G, X-Ray
Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna gi|6137357|pdb|1CVJ|H
Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding
Protein In Complex With Polyadenylate Rna
Length = 190
Score = 155 bits (393), Expect = 7e-37
Identities = 76/113 (67%), Positives = 89/113 (78%)
Frame = +1
Query: 628 APRWRTRSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALD 807
AP + SLYVGDL DVTEA L+E FS GP+ SIRVCRD +TRRSLGYAYVN+ D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 808 PQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKNIDAKA 966
A+RA++T+N+ V+ GKP+RIMWS RDPS RKSGVGNIFIKNLDK+ID KA
Sbjct: 65 ---AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKA 114
