Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000156A_C01 KCC000156A_c01
(705 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus] 40 0.046
dbj|BAC65530.1| mKIAA0324 protein [Mus musculus] 40 0.046
ref|NP_523779.1| lethal with a checkpoint kinase CG4943-PA [Dros... 39 0.060
ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|2635495... 39 0.078
ref|XP_220207.2| similar to splicing coactivator subunit SRm300;... 37 0.23
>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
Length = 2607
Score = 39.7 bits (91), Expect = 0.046
Identities = 30/107 (28%), Positives = 46/107 (42%)
Frame = -2
Query: 371 SLCSSSRLSQATHAANESSTGAPQPNVASEGVRENPRRRGGGMCHA*KHPASPGNPSSSR 192
S SSS S ++ +++ SS+ + P+ A G + P+ PASP P
Sbjct: 2483 SSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPK------------PASPKKPPPGE 2530
Query: 191 NMRTHYTRGVDGRYPSTHIHCAPVHRDGAPDAPPCQDLPASERVSPR 51
+ +D S + +PV R P +DL +SERVS R
Sbjct: 2531 RRSRSPRKPIDSLRDSRSLSYSPVERRQPSPQPSPRDLQSSERVSWR 2577
>dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]
Length = 1754
Score = 39.7 bits (91), Expect = 0.046
Identities = 30/107 (28%), Positives = 46/107 (42%)
Frame = -2
Query: 371 SLCSSSRLSQATHAANESSTGAPQPNVASEGVRENPRRRGGGMCHA*KHPASPGNPSSSR 192
S SSS S ++ +++ SS+ + P+ A G + P+ PASP P
Sbjct: 1630 SSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPK------------PASPKKPPPGE 1677
Query: 191 NMRTHYTRGVDGRYPSTHIHCAPVHRDGAPDAPPCQDLPASERVSPR 51
+ +D S + +PV R P +DL +SERVS R
Sbjct: 1678 RRSRSPRKPIDSLRDSRSLSYSPVERRQPSPQPSPRDLQSSERVSWR 1724
>ref|NP_523779.1| lethal with a checkpoint kinase CG4943-PA [Drosophila melanogaster]
gi|6646933|gb|AAF21125.1|AF216521_1 E3 ubiquitin ligase
[Drosophila melanogaster]
gi|15825411|gb|AAL09691.1|AF416571_1 ubiquitin-protein
ligase [Drosophila melanogaster]
gi|20068997|gb|AAM09646.1|AF464851_1 Smad-ubiquitin E3
ligase Smurf1 [Drosophila melanogaster]
gi|21627060|gb|AAF57824.3| CG4943-PA [Drosophila
melanogaster]
Length = 1061
Score = 39.3 bits (90), Expect = 0.060
Identities = 26/77 (33%), Positives = 36/77 (45%), Gaps = 7/77 (9%)
Frame = -3
Query: 649 TSQDPRHDMAPPSRIPRESSPKEYLA*PTGHEHE---RSLPAGRPGSASSHAFG----RA 491
T+ PRH +PP+ P S P G+ H S PAG G + S+ R+
Sbjct: 400 TTSPPRHSQSPPT--PNISPPASVTPSANGNVHSPNANSTPAGSGGGSRSYTAATPGQRS 457
Query: 490 RSNSSQSQGHSSNTRHR 440
+ SS+ QG S+TR R
Sbjct: 458 QRRSSRQQGEESSTRRR 474
>ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|26354955|dbj|BAC41104.1|
unnamed protein product [Mus musculus]
Length = 2607
Score = 38.9 bits (89), Expect = 0.078
Identities = 30/107 (28%), Positives = 46/107 (42%)
Frame = -2
Query: 371 SLCSSSRLSQATHAANESSTGAPQPNVASEGVRENPRRRGGGMCHA*KHPASPGNPSSSR 192
S SSS S ++ +++ SS+ + P+ A G + P+ PASP P
Sbjct: 2483 SSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPK------------PASPKKPPPGE 2530
Query: 191 NMRTHYTRGVDGRYPSTHIHCAPVHRDGAPDAPPCQDLPASERVSPR 51
+ +D S + +PV R P +DL +SERVS R
Sbjct: 2531 RGSRSPRKPIDSLRDSRSLSYSPVERRQPSPQPSPRDLQSSERVSWR 2577
>ref|XP_220207.2| similar to splicing coactivator subunit SRm300; RNA binding protein;
AT-rich element binding factor [Rattus norvegicus]
Length = 1971
Score = 37.4 bits (85), Expect = 0.23
Identities = 29/107 (27%), Positives = 45/107 (41%)
Frame = -2
Query: 371 SLCSSSRLSQATHAANESSTGAPQPNVASEGVRENPRRRGGGMCHA*KHPASPGNPSSSR 192
S SSS S ++ +++ SS+ + P+ A G + P+ PASP P
Sbjct: 1837 SSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPK------------PASPKKPPPGE 1884
Query: 191 NMRTHYTRGVDGRYPSTHIHCAPVHRDGAPDAPPCQDLPASERVSPR 51
+ +D S + +PV R P +D +SERVS R
Sbjct: 1885 RRSRSPRKPIDSLRDSRSLSYSPVERRQPSPQPSPRDQQSSERVSWR 1931
