Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000149A_C01 KCC000149A_c01
(705 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF43497.1|AF134579_1 arabinogalactan protein [Zea mays] 45 3e-04
pir||T34649 hypothetical protein SC1A11.02c SC1A11.02c - Strepto... 46 5e-04
gb|AAB71604.1| hypothetical protein [Myxococcus xanthus] 46 6e-04
sp|Q62635|MUC2_RAT Mucin 2 precursor (Intestinal mucin 2) gi|108... 46 6e-04
gb|AAO52185.1| similar to hypothetical protein [Schizosaccharomy... 45 8e-04
>gb|AAF43497.1|AF134579_1 arabinogalactan protein [Zea mays]
Length = 274
Score = 45.4 bits (106), Expect = 8e-04
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Frame = +3
Query: 393 RRSTRATSPRTSPPPASRAATSRPSACTSRGTTLRPTAPPSSTSWTSRPAPSPRRTAAAC 572
R +TRA+S T+ P S AA + SAC+ T+ +ST+ T+ P S + C
Sbjct: 3 RAATRASSAATATPSTSTAAGTPTSACSPTATSTSTRTSSASTAPTACPGTSRGSRPSPC 62
Query: 573 RSTTCS--SAP------SLTPLSWRCAWTA 638
ST S SAP + T +W WTA
Sbjct: 63 SSTATSSTSAPGRRPRGTTTSTAWSSPWTA 92
Score = 42.4 bits (98), Expect(2) = 3e-04
Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Frame = +3
Query: 399 STRATSPRTSPPPASRA---ATSRPSACTSRGTTLRPTAPPSSTSWTSRPAPSPRR---- 557
S R +PR P P R A +RP+AC+SR T P+ P P PS RR
Sbjct: 97 SCREPTPRGRPAPCRRCPSPAPARPTACSSRSTAGSPSGP--------TPCPSQRRSPGC 148
Query: 558 TAAACRSTTCSSAPSLTPLSWRCAWTAGCWA 650
T A R TT S + S R T W+
Sbjct: 149 TGTASRPTTASRTLTWPSSSARSPPTCTAWS 179
Score = 40.0 bits (92), Expect = 0.035
Identities = 46/140 (32%), Positives = 61/140 (42%), Gaps = 40/140 (28%)
Frame = +3
Query: 399 STRATSPRTSP---PPASRAATSRPSACTSRGTTL------RPTAPPSSTSWTSR----- 536
STR +S T+P P SR SRPS C+S T+ RP +ST+W+S
Sbjct: 37 STRTSSASTAPTACPGTSRG--SRPSPCSSTATSSTSAPGRRPRGTTTSTAWSSPWTASP 94
Query: 537 -------------------PAPSPRR-TAAACRSTTCS-SAPSLTPLSWRCAWTAGCWAT 653
P+P+P R TA + RST S S P+ P R + GC T
Sbjct: 95 CASCREPTPRGRPAPCRRCPSPAPARPTACSSRSTAGSPSGPTPCPSQRR---SPGCTGT 151
Query: 654 T*VSAA*PST-----TWPSA 698
A+ P+T TWPS+
Sbjct: 152 ----ASRPTTASRTLTWPSS 167
Score = 38.9 bits (89), Expect = 0.078
Identities = 31/95 (32%), Positives = 38/95 (39%), Gaps = 10/95 (10%)
Frame = +3
Query: 393 RRSTRATSPRTSPPPASRAATSRPSACTSRGTTLRPTAPP-SSTSWTSRPAPSPRRTAAA 569
R T +S SPP + + R + TS G+ RP PP T+ T RPA SP A
Sbjct: 160 RTLTWPSSSARSPPTCTAWSARRTAPTTSTGSMSRPQCPPWEGTATTPRPASSP--LTAP 217
Query: 570 CRSTTCSSAPSLTPLSW---------RCAWTAGCW 647
R T + T L W AW A W
Sbjct: 218 WRVTRRLAVAVTTALLWCQRSLASPVPVAWVAKAW 252
Score = 36.2 bits (82), Expect = 0.51
Identities = 45/155 (29%), Positives = 57/155 (36%), Gaps = 14/155 (9%)
Frame = -2
Query: 656 RRGPAPCRPGAPP*QRRQTWCGRACGRAAGGSSPPWGRGRTRRPAGR*RWCGRSQSCTP* 477
R PAPCR P R T C R+ GS G T P+ R RS CT
Sbjct: 104 RGRPAPCRRCPSPAPARPTACS---SRSTAGSP----SGPTPCPSQR-----RSPGCT-- 149
Query: 476 STCGRARSSCSGSRWRGSARRSCASRTP----SAAACQSCSCRNRPTCPAGQSQVLDRQG 309
T R ++ W S+ RS + T A S +RP CP +G
Sbjct: 150 GTASRPTTASRTLTWPSSSARSPPTCTAWSARRTAPTTSTGSMSRPQCPPW-------EG 202
Query: 308 TVMPPKWRARP-GAPW---------LTKTVLLCTR 234
T P+ + P APW +T +L C R
Sbjct: 203 TATTPRPASSPLTAPWRVTRRLAVAVTTALLWCQR 237
Score = 33.5 bits (75), Expect = 3.3
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Frame = +3
Query: 381 CGG*RRSTRATSPRTSPPPASRAATSRPSACTSRGT----TLRPTAPPSSTSWTSRPAPS 548
C RRS T + P ASR T S+ S T + R TAP +ST SRP
Sbjct: 139 CPSQRRSPGCTGTASRPTTASRTLTWPSSSARSPPTCTAWSARRTAPTTSTGSMSRPQCP 198
Query: 549 PRRTAAACRSTTCSSAPSLTPLS--WR 623
P T + P+ +PL+ WR
Sbjct: 199 P------WEGTATTPRPASSPLTAPWR 219
Score = 23.9 bits (50), Expect(2) = 3e-04
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 220 RSNQPRVQSSTVLVSHGAPGRARHFGGITVPCRSSTW 330
R ++P SST S APGR R G T SS W
Sbjct: 55 RGSRPSPCSSTATSSTSAPGR-RPRGTTTSTAWSSPW 90
>pir||T34649 hypothetical protein SC1A11.02c SC1A11.02c - Streptomyces
coelicolor (fragment)
Length = 152
Score = 46.2 bits (108), Expect = 5e-04
Identities = 44/138 (31%), Positives = 48/138 (33%), Gaps = 12/138 (8%)
Frame = -2
Query: 635 RPGAPP*QRRQTWCGRACGRAAGGSSPPWGRG-RTRRPAGR*RWCGRSQSCTP*STCGRA 459
R G P R GRA GRA GG PW R T AG RW GR+ P S
Sbjct: 28 RGGRCPAGRSSPGTGRARGRARGGR--PWRRSDSTCGSAGCSRWTGRTGRAGPRS----- 80
Query: 458 RSSCSGSRWRGSARRSCASRTPSAAACQSCSCRNRPTCPAGQSQVLDRQGTVMPP----- 294
WR C RT S + CR R CP G + + T P
Sbjct: 81 --------WRTCTTAGCCRRTIS----RRSGCRRRSCCPGGWCRARNSAPTCSVPCTAGC 128
Query: 293 -----KWRARPGAP-WLT 258
WR P P W T
Sbjct: 129 WPRWTSWRTAPARPSWRT 146
Score = 40.8 bits (94), Expect = 0.021
Identities = 30/92 (32%), Positives = 38/92 (40%), Gaps = 12/92 (13%)
Frame = +3
Query: 417 PRTSPPPASRAATSRPSACTSRGTTLRPTAPPSSTS--------WTSRPAPSPRRTAAAC 572
P +SP P + T R + C+S TT R P+ S +R RR+ + C
Sbjct: 2 PASSPVPPRSSGTPRGACCSSSRTTARGGRCPAGRSSPGTGRARGRARGGRPWRRSDSTC 61
Query: 573 RSTTCSSAPSLT----PLSWRCAWTAGCWATT 656
S CS T P SWR TAGC T
Sbjct: 62 GSAGCSRWTGRTGRAGPRSWRTCTTAGCCRRT 93
>gb|AAB71604.1| hypothetical protein [Myxococcus xanthus]
Length = 307
Score = 45.8 bits (107), Expect = 6e-04
Identities = 45/150 (30%), Positives = 59/150 (39%), Gaps = 5/150 (3%)
Frame = +3
Query: 174 SLSLGSKQGIDFALHTQQSTSRTK*HSLGQPWGAGT-----CSPLRWHYCSLPV*HLALP 338
+L+LG+ G+ Q++SR + + G P CS W S P
Sbjct: 18 ALALGNFDGVHVG---HQASSRRRAATGGPPPSPSIPIQARCSSRSWRRSSSPC---CRA 71
Query: 339 SWTCRTISA*ATLACGG*RRSTRATSPRTSPPPASRAATSRPSACTSRGTTLRPTAPPSS 518
SW+C S C R +TRA PRTS +S + SR S + T RP A
Sbjct: 72 SWSCSRSSGWTPRWCNPSRANTRARRPRTSRQRSSTRSASRTSWWAATSPTARPGA---- 127
Query: 519 TSWTSRPAPSPRRTAAACRSTTCSSAPSLT 608
AP R AAA R T P +T
Sbjct: 128 -------APRRLREAAARRGATVHVVPPVT 150
>sp|Q62635|MUC2_RAT Mucin 2 precursor (Intestinal mucin 2) gi|1083720|pir||A54895 mucin
2, intestinal/tracheal - rat (fragment)
gi|12831482|gb|AAA21655.2| mucin [Rattus norvegicus]
Length = 1513
Score = 45.8 bits (107), Expect = 6e-04
Identities = 24/74 (32%), Positives = 41/74 (54%), Gaps = 2/74 (2%)
Frame = +3
Query: 402 TRATSPRTSPPPASRAATSRPSACTSRGTTLRPTAPPSSTSWTSRPAPSP--RRTAAACR 575
T SP TSP ++ + T+ P+ T+ TT + PS T+ T+ P PSP T+
Sbjct: 1431 TSTVSPTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTPS 1490
Query: 576 STTCSSAPSLTPLS 617
TT +++P+ +P++
Sbjct: 1491 PTTSTTSPTTSPIT 1504
>gb|AAO52185.1| similar to hypothetical protein [Schizosaccharomyces pombe]
[Dictyostelium discoideum]
Length = 657
Score = 45.4 bits (106), Expect = 8e-04
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +3
Query: 303 YCSLPV*HLALPSWTCRTISA*ATLACGG*RRSTRATSPRTSPPPASRAATSRPSACTSR 482
YC+LP +T S+ T + ST +TS TSP AS +T+ PS ++
Sbjct: 502 YCNLP-----------QTSSSSTTSSSSTSSPSTSSTSSTTSPSTASTTSTTSPSTASTT 550
Query: 483 GTTLRPTAPPSSTSWTSRPAPSPRRTA-AACRSTTCSSAPSLTPLS 617
TT TA +ST+ S +PS T+ + S+T +A S + LS
Sbjct: 551 STTSPSTASTTSTTSPSTASPSTSSTSLTSSTSSTTKTASSSSSLS 596
Score = 33.9 bits (76), Expect = 2.5
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +3
Query: 399 STRATSPRTSPPPASRAATSRPSACTSRGTTLRPTAPPSSTSWTSRPAPSPRRTAAACRS 578
ST +T+ TSP AS +T+ PS + ++ T+ SST+ T+ + S T+ S
Sbjct: 545 STASTTSTTSPSTASTTSTTSPSTASPSTSSTSLTSSTSSTTKTASSSSSLSSTSGTGTS 604
Query: 579 TTCSSA 596
++ S++
Sbjct: 605 SSSSNS 610
