Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000142A_C01 KCC000142A_c01
(1205 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191790.1| RNA helicase, putative [Arabidopsis thaliana] g... 310 e-148
ref|NP_182247.1| RNA helicase, putative [Arabidopsis thaliana] g... 300 e-146
ref|XP_309498.1| ENSANGP00000021966 [Anopheles gambiae] gi|21293... 280 e-130
ref|NP_610269.1| CG11107-PA [Drosophila melanogaster] gi|7304234... 276 e-128
ref|XP_214053.2| similar to Putative pre-mRNA splicing factor RN... 275 e-128
>ref|NP_191790.1| RNA helicase, putative [Arabidopsis thaliana]
gi|11346355|pir||T48023 ATP-dependent RNA helicase-like
protein - Arabidopsis thaliana
gi|7340702|emb|CAB82945.1| ATP-dependent RNA
helicase-like protein [Arabidopsis thaliana]
gi|21539575|gb|AAM53340.1| ATP-dependent RNA
helicase-like protein [Arabidopsis thaliana]
gi|34098783|gb|AAQ56774.1| At3g62310 [Arabidopsis
thaliana]
Length = 726
Score = 310 bits (793), Expect(3) = e-148
Identities = 161/242 (66%), Positives = 191/242 (78%), Gaps = 17/242 (7%)
Frame = +1
Query: 97 DRKRKL---EIDEEPGRPGPAPEGAG---------VNPFTGATYSQRYYDILAKRHGLPV 240
+RKRK+ ++ ++P P + +G +N + G YSQRYYDIL KR LPV
Sbjct: 4 ERKRKISLFDVMDDPSAPAKNAKTSGLPDGGINSLINKWNGKPYSQRYYDILEKRRTLPV 63
Query: 241 WQAKDEFVNMIHGHQTTVLVGETGSGKTTQIPQFIAEA--GYTANRK---IVACTQPRRV 405
W K+EF+ ++ +QT +LVGETGSGKTTQIPQF+ +A T++++ +V CTQPRRV
Sbjct: 64 WLQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKWLVGCTQPRRV 123
Query: 406 AAMSVARRVAEEMDVKLGEEVGYSIRFEECSGPKTCVKFLTDGMLLREAMTDPLLERYSV 585
AAMSV+RRVAEEMDV +GEEVGYSIRFE+CS P+T +K+LTDGMLLREAM DPLLERY V
Sbjct: 124 AAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADPLLERYKV 183
Query: 586 IILDEAHERTLATDVLFGLLKEILKNRKDLKLVVMSATLEAEKFQGYFLDAPLMKVPGRL 765
IILDEAHERTLATDVLFGLLKE+LKNR DLKLVVMSATLEAEKFQ YF APLMKVPGRL
Sbjct: 184 IILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQDYFSGAPLMKVPGRL 243
Query: 766 HP 771
HP
Sbjct: 244 HP 245
Score = 203 bits (517), Expect(3) = e-148
Identities = 96/117 (82%), Positives = 108/117 (92%)
Frame = +3
Query: 855 QPPGDVLLFLTGEEEIEDACRKVTKELQGMGDKVGPIKVLPLYSTLPPQQQQRIFEPAPA 1034
+PPGD+L+FLTGEEEIEDACRK+ KE+ +GD+VGPIKV+PLYSTLPP QQ+IF+PAP
Sbjct: 273 EPPGDILVFLTGEEEIEDACRKINKEVGNLGDQVGPIKVVPLYSTLPPAMQQKIFDPAPE 332
Query: 1035 PAREGGPAGRKIVISTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESLLVSPIS 1205
P EGGP GRKIV+STNIAETSLTIDGIVYVIDPGF+KQKVYNPRIRVESLLVSPIS
Sbjct: 333 PVTEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPIS 389
Score = 58.5 bits (140), Expect(3) = e-148
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +2
Query: 749 RCPAACTQVEIFYTQEPERDYLEAAIRTVVQIHVC 853
+ P VEIFYTQEPERDYLEAAIRTVVQIH+C
Sbjct: 238 KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMC 272
>ref|NP_182247.1| RNA helicase, putative [Arabidopsis thaliana]
gi|3913425|sp|O22899|DD15_ARATH Putative pre-mRNA
splicing factor ATP-dependent RNA helicase
gi|25409033|pir||H84912 probable pre-mRNA splicing
factor RNA helicase [imported] - Arabidopsis thaliana
gi|2275203|gb|AAB63825.1| putative pre-mRNA splicing
factor RNA helicase [Arabidopsis thaliana]
gi|22135845|gb|AAM91108.1| At2g47250/T8I13.9
[Arabidopsis thaliana] gi|28416499|gb|AAO42780.1|
At2g47250/T8I13.9 [Arabidopsis thaliana]
Length = 729
Score = 300 bits (768), Expect(3) = e-146
Identities = 159/246 (64%), Positives = 188/246 (75%), Gaps = 21/246 (8%)
Frame = +1
Query: 97 DRKRKL---EIDEEP----------GRPGPAPEGAG---VNPFTGATYSQRYYDILAKRH 228
+RKRK+ ++ E+P G A G G +N + G YSQRY++IL KR
Sbjct: 4 ERKRKVSLFDVMEDPSLSSKNTKSNGLGLAAAAGGGSNLINKWNGKAYSQRYFEILEKRR 63
Query: 229 GLPVWQAKDEFVNMIHGHQTTVLVGETGSGKTTQIPQFIAEAGYTAN-----RKIVACTQ 393
LPVW KD+F+N ++ +QT +LVGETGSGKTTQIPQF+ +A N + +V CTQ
Sbjct: 64 DLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQ 123
Query: 394 PRRVAAMSVARRVAEEMDVKLGEEVGYSIRFEECSGPKTCVKFLTDGMLLREAMTDPLLE 573
PRRVAAMSV+RRVA+EMDV +GEEVGYSIRFE+C+ +T +K+LTDGMLLREAM DPLLE
Sbjct: 124 PRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLE 183
Query: 574 RYSVIILDEAHERTLATDVLFGLLKEILKNRKDLKLVVMSATLEAEKFQGYFLDAPLMKV 753
RY VIILDEAHERTLATDVLFGLLKE+L+NR DLKLVVMSATLEAEKFQ YF APLMKV
Sbjct: 184 RYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKV 243
Query: 754 PGRLHP 771
PGRLHP
Sbjct: 244 PGRLHP 249
Score = 206 bits (523), Expect(3) = e-146
Identities = 96/117 (82%), Positives = 109/117 (93%)
Frame = +3
Query: 855 QPPGDVLLFLTGEEEIEDACRKVTKELQGMGDKVGPIKVLPLYSTLPPQQQQRIFEPAPA 1034
+PPGD+L+FLTGEEEIEDACRK+ KE+ +GD+VGP+KV+PLYSTLPP QQ+IF+PAP
Sbjct: 277 EPPGDILVFLTGEEEIEDACRKINKEVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPV 336
Query: 1035 PAREGGPAGRKIVISTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESLLVSPIS 1205
P EGGPAGRKIV+STNIAETSLTIDGIVYVIDPGF+KQKVYNPRIRVESLLVSPIS
Sbjct: 337 PLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPIS 393
Score = 58.5 bits (140), Expect(3) = e-146
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +2
Query: 749 RCPAACTQVEIFYTQEPERDYLEAAIRTVVQIHVC 853
+ P VEIFYTQEPERDYLEAAIRTVVQIH+C
Sbjct: 242 KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMC 276
>ref|XP_309498.1| ENSANGP00000021966 [Anopheles gambiae] gi|21293004|gb|EAA05149.1|
ENSANGP00000021966 [Anopheles gambiae str. PEST]
Length = 767
Score = 280 bits (717), Expect(3) = e-130
Identities = 138/210 (65%), Positives = 166/210 (78%)
Frame = +1
Query: 142 GPAPEGAGVNPFTGATYSQRYYDILAKRHGLPVWQAKDEFVNMIHGHQTTVLVGETGSGK 321
G A E G NP G Y+Q YY + KR LPV++ K +F+ ++ HQ VLVGETGSGK
Sbjct: 80 GSATESGGKNPLNGIAYTQNYYKLYKKRITLPVFEYKTDFMRLLSEHQCIVLVGETGSGK 139
Query: 322 TTQIPQFIAEAGYTANRKIVACTQPRRVAAMSVARRVAEEMDVKLGEEVGYSIRFEECSG 501
TTQIPQ+ E + K VACTQPRRVAAMSVA+RV+EEMDV LG+EVGYSIRFE+CS
Sbjct: 140 TTQIPQWCVEYALQTSSKGVACTQPRRVAAMSVAQRVSEEMDVMLGQEVGYSIRFEDCSS 199
Query: 502 PKTCVKFLTDGMLLREAMTDPLLERYSVIILDEAHERTLATDVLFGLLKEILKNRKDLKL 681
P+T +K++TDGMLLRE M+DP+LE Y VI+LDEAHERTLATD+L G+LKE+++ RKDLKL
Sbjct: 200 PRTLLKYMTDGMLLREGMSDPMLEAYQVILLDEAHERTLATDLLMGVLKEVIRQRKDLKL 259
Query: 682 VVMSATLEAEKFQGYFLDAPLMKVPGRLHP 771
VVMSATL+A KFQ YF +APLM VPGR HP
Sbjct: 260 VVMSATLDAGKFQQYFDNAPLMNVPGRTHP 289
Score = 174 bits (441), Expect(3) = e-130
Identities = 84/114 (73%), Positives = 99/114 (86%)
Frame = +3
Query: 864 GDVLLFLTGEEEIEDACRKVTKELQGMGDKVGPIKVLPLYSTLPPQQQQRIFEPAPAPAR 1043
GD+L+FLTG+EEIE+AC++V +E+ +G VG +K +PLYSTLPP QQ+IFEPAP P R
Sbjct: 321 GDILMFLTGQEEIEEACKRVKREIDNLGPDVGELKCIPLYSTLPPPMQQKIFEPAP-PKR 379
Query: 1044 EGGPAGRKIVISTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESLLVSPIS 1205
G GRK+VISTNIAETSLTIDG+V+VIDPGFSKQKVYNPRIRVESLLVSPIS
Sbjct: 380 PNGAIGRKVVISTNIAETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVSPIS 433
Score = 55.5 bits (132), Expect(3) = e-130
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = +2
Query: 755 PAACTQVEIFYTQEPERDYLEAAIRTVVQIHVC 853
P VEIFYT EPERDYLEAAIRTV+QIH+C
Sbjct: 284 PGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMC 316
>ref|NP_610269.1| CG11107-PA [Drosophila melanogaster] gi|7304234|gb|AAF59269.1|
CG11107-PA [Drosophila melanogaster]
gi|16197905|gb|AAL13713.1| GM13272p [Drosophila
melanogaster]
Length = 729
Score = 276 bits (705), Expect(3) = e-128
Identities = 136/209 (65%), Positives = 169/209 (80%)
Frame = +1
Query: 145 PAPEGAGVNPFTGATYSQRYYDILAKRHGLPVWQAKDEFVNMIHGHQTTVLVGETGSGKT 324
P + +NP T YSQRY ++ KR LPV++ + +F+ ++ HQ VLVGETGSGKT
Sbjct: 43 PNKQPPTMNPLTNTPYSQRYQNLYKKRIALPVFEYQADFMRLLSLHQCIVLVGETGSGKT 102
Query: 325 TQIPQFIAEAGYTANRKIVACTQPRRVAAMSVARRVAEEMDVKLGEEVGYSIRFEECSGP 504
TQIPQ+ + + RK V+CTQPRRVAAMSVA+RV+EEMDVKLGEEVGYSIRFE+CS
Sbjct: 103 TQIPQWCVDFAVSKGRKGVSCTQPRRVAAMSVAQRVSEEMDVKLGEEVGYSIRFEDCSTA 162
Query: 505 KTCVKFLTDGMLLREAMTDPLLERYSVIILDEAHERTLATDVLFGLLKEILKNRKDLKLV 684
KT +K++TDGMLLREAM+DP+L++Y VI+LDEAHERTLATD+L G+LKE+++ R DLKLV
Sbjct: 163 KTLLKYMTDGMLLREAMSDPMLDQYQVILLDEAHERTLATDILMGVLKEVIRQRSDLKLV 222
Query: 685 VMSATLEAEKFQGYFLDAPLMKVPGRLHP 771
VMSATL+A KFQ YF +APLMKVPGR HP
Sbjct: 223 VMSATLDAGKFQQYFDNAPLMKVPGRTHP 251
Score = 172 bits (435), Expect(3) = e-128
Identities = 80/114 (70%), Positives = 99/114 (86%)
Frame = +3
Query: 864 GDVLLFLTGEEEIEDACRKVTKELQGMGDKVGPIKVLPLYSTLPPQQQQRIFEPAPAPAR 1043
GD+L+FLTG+EEIE+AC+++ +E+ +G ++G +K +PLYSTLPP QQRIFEPAP P
Sbjct: 283 GDILMFLTGQEEIEEACKRIKREIDNLGSEIGELKCIPLYSTLPPNLQQRIFEPAPPP-N 341
Query: 1044 EGGPAGRKIVISTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESLLVSPIS 1205
G GRK+V+STNIAETSLTIDG+V+VIDPGF+KQKVYNPRIRVESLLVSPIS
Sbjct: 342 ANGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPIS 395
Score = 55.8 bits (133), Expect(3) = e-128
Identities = 25/35 (71%), Positives = 28/35 (79%)
Frame = +2
Query: 749 RCPAACTQVEIFYTQEPERDYLEAAIRTVVQIHVC 853
+ P VEIFYT EPERDYLEAAIRTV+QIH+C
Sbjct: 244 KVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMC 278
>ref|XP_214053.2| similar to Putative pre-mRNA splicing factor RNA helicase (DEAH box
protein 15) [Rattus norvegicus]
Length = 795
Score = 275 bits (702), Expect(3) = e-128
Identities = 136/204 (66%), Positives = 165/204 (80%), Gaps = 2/204 (0%)
Frame = +1
Query: 166 VNPFTGATYSQRYYDILAKRHGLPVWQAKDEFVNMIHGHQTTVLVGETGSGKTTQIPQFI 345
+NPFT ++ RYYDIL KR LPVW+ KD F +++ HQ+ VLVGETGSGKTTQIPQ+
Sbjct: 115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174
Query: 346 AE--AGYTANRKIVACTQPRRVAAMSVARRVAEEMDVKLGEEVGYSIRFEECSGPKTCVK 519
E ++ VACTQPRRVAAMSVA+RVA+EMDV LG+EVGYSIRFE+CS KT +K
Sbjct: 175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234
Query: 520 FLTDGMLLREAMTDPLLERYSVIILDEAHERTLATDVLFGLLKEILKNRKDLKLVVMSAT 699
++TDGMLLREAM DPLLERY VIILDEAHERTLATD+L G+LKE+++ R DLK++VMSAT
Sbjct: 235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294
Query: 700 LEAEKFQGYFLDAPLMKVPGRLHP 771
L+A KFQ YF + PL+ +PGR HP
Sbjct: 295 LDAGKFQIYFDNCPLLTIPGRTHP 318
Score = 172 bits (437), Expect(3) = e-128
Identities = 81/114 (71%), Positives = 102/114 (89%)
Frame = +3
Query: 864 GDVLLFLTGEEEIEDACRKVTKELQGMGDKVGPIKVLPLYSTLPPQQQQRIFEPAPAPAR 1043
GD+LLFLTG+EEI++AC+++ +E+ +G +VG IK++PLYSTLPPQQQQRIFEP P P +
Sbjct: 350 GDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPP-PKK 408
Query: 1044 EGGPAGRKIVISTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESLLVSPIS 1205
+ G GRK+V+STNIAETSLTIDG+V+VIDPGF+KQKVYNPRIRVESLLV+ IS
Sbjct: 409 QNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAIS 462
Score = 55.5 bits (132), Expect(3) = e-128
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = +2
Query: 755 PAACTQVEIFYTQEPERDYLEAAIRTVVQIHVC 853
P VEIFYT EPERDYLEAAIRTV+QIH+C
Sbjct: 313 PGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMC 345
