Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000124A_C01 KCC000124A_c01
(664 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T08038 probable mitochondrial matrix protein precursor - Ch... 132 6e-30
ref|ZP_00009817.1| COG2885: Outer membrane protein and related p... 49 9e-05
ref|NP_506551.1| putative protein family member, with at least 2... 45 7e-04
ref|NP_851896.1| very large tegument protein [Cercopithecine her... 44 0.002
gb|AAG49547.1|AF261103_3 translation initiation factor IF2 [Myxo... 44 0.002
>pir||T08038 probable mitochondrial matrix protein precursor - Chlamydomonas
reinhardtii gi|1877183|emb|CAA72325.1| putative
mitochondrial matrix protein [Chlamydomonas reinhardtii]
Length = 435
Score = 132 bits (331), Expect = 6e-30
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = +1
Query: 478 MGMQAAGMDRSSARRTTRQRRRGCNSRRSRNRTSQPQAPALAKQHAACTCQSRSRWPGAN 657
MGMQAAGMDRSSARRTTRQRRRGCNSRRSRNRTSQPQAPALAKQHAACTCQSRSRWPGAN
Sbjct: 1 MGMQAAGMDRSSARRTTRQRRRGCNSRRSRNRTSQPQAPALAKQHAACTCQSRSRWPGAN 60
Query: 658 TH 663
TH
Sbjct: 61 TH 62
>ref|ZP_00009817.1| COG2885: Outer membrane protein and related
peptidoglycan-associated (lipo)proteins
[Rhodopseudomonas palustris]
Length = 689
Score = 48.5 bits (114), Expect = 9e-05
Identities = 39/115 (33%), Positives = 46/115 (39%), Gaps = 1/115 (0%)
Frame = -2
Query: 567 AAPPRVATAPALPSGPPSAAPVHPCCLHPHSVGLRPAPAAAGARRLSEPRCVARAGQKSP 388
A PP APA P PSA P P PH P PA A P A A
Sbjct: 55 APPPGPRPAPAPPKAAPSAPPPPPAAAPPHVAPPPPPPAPPRAAPPPPPPAAAPAPAPKR 114
Query: 387 AKPAPACPLLYSAPDALTQ*HSSP*PLAQQSWRPGNASP*PR-SFPGKSAANGAP 226
A+P P P +SAP + P P A + P A+P R + P +AA P
Sbjct: 115 AEPPPPPPPSHSAPPPPPPHAAPPPPPAPKPSAPPTAAPAERPAAPPPAAAPVRP 169
Score = 34.3 bits (77), Expect = 1.7
Identities = 37/127 (29%), Positives = 47/127 (36%), Gaps = 15/127 (11%)
Frame = -2
Query: 561 PPRVATAP------ALPSGPPSAAPVHPCCLHPHSVGLRPAPAAAGARRLSEPRCVA--R 406
PP +AP A P PP+ P P P P PAAA R + P A R
Sbjct: 121 PPPSHSAPPPPPPHAAPPPPPAPKPSAPPTAAPAERPAAPPPAAAPVRPPAPPAGEAPQR 180
Query: 405 AGQKSPAKPAPACPLLYSAPDALTQ*HSSP*PLAQQSWRPGNASP*PRSF-------PGK 247
G A P A P +APDA + P ++ PG P + PG+
Sbjct: 181 RGPPPGAVPPNAVPPNAAAPDAAKPDAAKQPPGERRGPPPGAPGTPPNATAPGMTPPPGE 240
Query: 246 SAANGAP 226
+ G P
Sbjct: 241 APRRGPP 247
Score = 33.1 bits (74), Expect = 3.8
Identities = 37/117 (31%), Positives = 44/117 (36%), Gaps = 14/117 (11%)
Frame = -2
Query: 567 AAPPRVATAPALPSGP---PSAAPVHPCCLHPHSV--GLRPAPAAAGARRLSEPRCVARA 403
AAP T+PA PSGP P A P P + G P P A + P
Sbjct: 267 AAPQAAPTSPANPSGPAVAPVARPSGERGPQPGAPAGGPPPRPQAGPGAPGAGPAVAPPP 326
Query: 402 GQKSPAKPAPACPLLYSA-------PDALTQ--*HSSP*PLAQQSWRPGNASP*PRS 259
GQ P P P P A P A+T + P P A PG +P PR+
Sbjct: 327 GQPQPVPPQPGQPPAGPAVAPPAPPPPAVTAPIPPAPPPPQALTPIAPGAQAPGPRN 383
Score = 32.3 bits (72), Expect = 6.5
Identities = 35/114 (30%), Positives = 44/114 (37%)
Frame = -2
Query: 579 AGSVAAPPRVATAPALPSGPPSAAPVHPCCLHPHSVGLRPAPAAAGARRLSEPRCVARAG 400
A A PP A A PP AP P P + P PAAA A P+
Sbjct: 69 AAPSAPPPPPAAA------PPHVAPPPPPPAPPRAAPPPPPPAAAPA---PAPKRAEPPP 119
Query: 399 QKSPAKPAPACPLLYSAPDALTQ*HSSP*PLAQQSWRPGNASP*PRSFPGKSAA 238
P+ AP P ++AP S P A + RP A+P P + P + A
Sbjct: 120 PPPPSHSAPPPPPPHAAPPPPPAPKPSAPPTAAPAERP--AAPPPAAAPVRPPA 171
Score = 32.0 bits (71), Expect = 8.5
Identities = 36/125 (28%), Positives = 43/125 (33%), Gaps = 8/125 (6%)
Frame = -2
Query: 576 GSVAAPPRVATAPALP-------SGPPSAAPVHPCCLHPHSVGLRPAPAAAGARRLSEPR 418
GS+ P A + + P G P+ AP G RPAPA A + P
Sbjct: 17 GSLIGHPAAAESASAPMLLAQAVQGGPAPAPSEEKAKEAPPPGPRPAPAPPKAAPSAPPP 76
Query: 417 CVARA-GQKSPAKPAPACPLLYSAPDALTQ*HSSP*PLAQQSWRPGNASP*PRSFPGKSA 241
A A +P P PA P P P P A + P A P P P SA
Sbjct: 77 PPAAAPPHVAPPPPPPAPPRAAPPP---------PPPAAAPAPAPKRAEPPPPPPPSHSA 127
Query: 240 ANGAP 226
P
Sbjct: 128 PPPPP 132
>ref|NP_506551.1| putative protein family member, with at least 2 transmembrane
domains (5O806) [Caenorhabditis elegans]
gi|7503652|pir||T22341 hypothetical protein F47B8.5 -
Caenorhabditis elegans gi|3877270|emb|CAB01192.1|
Hypothetical protein F47B8.5 [Caenorhabditis elegans]
Length = 581
Score = 45.4 bits (106), Expect = 7e-04
Identities = 42/148 (28%), Positives = 56/148 (37%), Gaps = 27/148 (18%)
Frame = -2
Query: 585 GLAGSVAAPPRVATAPALPSGPPSAAPVHPCCLHPHSVGLRP-----------APAAAGA 439
G G AAPP A A P+ PP+ PV P + + P APA G+
Sbjct: 401 GGGGGEAAPPSSPPADAAPAPPPAPEPVPAPAPAPEAAPVAPSADAGGYAAAAAPAGGGS 460
Query: 438 -----RRLSEPRCVARAGQKSPAKPAPA-CPLLYSAPDALTQ*HSSP----------*PL 307
RR++ A +PA+PAPA P AP+A +P P
Sbjct: 461 YPAKKRRVARDYAEGEAAPAAPAEPAPAPAPAPAPAPEAAPAPEPAPAPAPAPAPEAAPA 520
Query: 306 AQQSWRPGNASP*PRSFPGKSAANGAPK 223
A P +P P P + A AP+
Sbjct: 521 AAPDAAPAEPAPVPEVAPAPAPAPAAPE 548
>ref|NP_851896.1| very large tegument protein [Cercopithecine herpesvirus 1]
gi|30844278|gb|AAP41454.1| very large tegument protein
[Cercopithecine herpesvirus 1]
Length = 3288
Score = 44.3 bits (103), Expect = 0.002
Identities = 35/106 (33%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Frame = -2
Query: 648 RPTTPRLTSTRCVLLGQGRRLGLAGSVAAP--PRVATAPALPSGPPSAAPVHPCCLHPHS 475
RPT+P + G+ + AAP P APA P+ P AAP P +
Sbjct: 2843 RPTSPATPTPTVAAAGRASAPPAPAAPAAPAAPAAPAAPAAPAAP--AAPAAPAAPAAPA 2900
Query: 474 VGLRPAPAAAGARRLSEPRCVARAGQKSPAKPAPAC-PLLYSAPDA 340
PA AA A + A A +PA PAPA P++ AP A
Sbjct: 2901 APAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAAVPVVVPAPTA 2946
Score = 33.9 bits (76), Expect = 2.2
Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 1/142 (0%)
Frame = -2
Query: 648 RPTTPRLTSTRCVLLGQGRRLGLAGSVAAPPRVATAPALPSGPPSAAPVHPCCLHPHSVG 469
RP TP ++R G G + APP AP P+GP +A+ P P +
Sbjct: 409 RPPTP---ASRPPTPGAPPTPGAPPTPGAPPTPG-APPTPAGPTTASSEPPTPAGPTTAS 464
Query: 468 LRPAPAAAGARRLSEPRCVA-RAGQKSPAKPAPACPLLYSAPDALTQ*HSSP*PLAQQSW 292
P A SEP A R + P PA P S P T P P +
Sbjct: 465 SEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPP--TPAGRPPTPAGRP-- 520
Query: 291 RPGNASP*PRSFPGKSAANGAP 226
P A+P S P GAP
Sbjct: 521 -PTPANPTASSEPPTPNPEGAP 541
Score = 33.9 bits (76), Expect = 2.2
Identities = 32/94 (34%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Frame = -2
Query: 573 SVAAPPRVATAPALPSGPPSAA--PVHPCCLHPHSVGLRPAPAAAGARRLSEPRC----- 415
S A P TA A P+ PP AA P P + P P A A R S P
Sbjct: 2817 SPTANPHATTASATPAPPPVAATGPTRP------TSPATPTPTVAAAGRASAPPAPAAPA 2870
Query: 414 --------VARAGQKSPAKPA-PACPLLYSAPDA 340
A A +PA PA PA P +AP A
Sbjct: 2871 APAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAA 2904
Score = 32.3 bits (72), Expect = 6.5
Identities = 29/94 (30%), Positives = 37/94 (38%), Gaps = 11/94 (11%)
Frame = -2
Query: 579 AGSVAAPPRVATAPALPSGPPS-AAPVHPCCLHPHSVGLRPAPAA------AGARRLSEP 421
A + A P APA P+ P + AAP P + PAPAA A L+
Sbjct: 2892 APAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAAVPVVVPAPTATLTAT 2951
Query: 420 RCVARAGQKSPAKPAP----ACPLLYSAPDALTQ 331
+ A +PA P P + P S P A Q
Sbjct: 2952 TTTSPAPAATPASPVPTPTSSLPTPPSKPPAFFQ 2985
>gb|AAG49547.1|AF261103_3 translation initiation factor IF2 [Myxococcus xanthus]
Length = 1070
Score = 44.3 bits (103), Expect = 0.002
Identities = 43/140 (30%), Positives = 53/140 (37%), Gaps = 2/140 (1%)
Frame = -2
Query: 663 VRVCARPTTPR-LTSTRCVLLGQGRRLGLAGSVAAPPRVATAPALPSGPPSAAPVHPCCL 487
V PT P +TST + + + A VA+PP A AP P P AA
Sbjct: 146 VAAATEPTAPAAVTSTPPAQVAEATKAPAAAEVASPPPAAEAPQAPVEAPRAAV------ 199
Query: 486 HPHSVGLRPAPAAAGAR-RLSEPRCVARAGQKSPAKPAPACPLLYSAPDALTQ*HSSP*P 310
PAPAAA R + E + + +SP PA P S + T P P
Sbjct: 200 --------PAPAAAQPRPSVQESTTLPQPPPRSPVPPAVRTP--SSTSSSATVVSRGPAP 249
Query: 309 LAQQSWRPGNASP*PRSFPG 250
QQ PG P PG
Sbjct: 250 GYQQRGGPGGGRPGGPGGPG 269
