KCC000123A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000123A_C01 KCC000123A_c01
ccgcCATGAACCTTCAGTTGCTTACTTGAAAGCGAACCGGTTAAGACCGCAGGCCAAAGT
TTGTCACGTCATTGCACCTCATTCCGCGAATCCGCCGAGTTCACTTGCAGCTTGCGGGCC
CGACTACTGCAGTTCGTCGCTTGCTGTCTCCACTCACCAATAAAGTACCCAGCAAACATG
GCCCTGAACATGAAGCAGCAGCAGGCTGGCCTGTCGCGCAAGGCCGCGCGCTCCGTCTCG
AGCCGTGCGCCCGTCGTTGTGCGCGCGGTTGCCGCCCCGGTCGCTCCGGCGGCCGAGGCC
GAGGCGAAGAAGGCCTATGGAGTCTTCCGCCTTTCATATGATACCCAGAACGAGGATGCT
TCGCTGACCCGCAGCTGGAAGAAGACCGTCAAGGTTGCCGTGACTGGTGCCTCTGGCAAC
ATCGCGAACCACCTGCTATTCATGCTTGCTTCCGGTGAGGTGTATGGCAAGGACCAGCCC
ATTGCGCTTCAGCTGCTGGGCAGCGAGCGGTCGAAGGAGGCGCTCGAGGGTGTCGCGATG
GAGCTCGAGGACAGCCTGTACCCACTGCTGCGCGAGGTGTCCATCGGCACCGACCCCTAT
GAGGTGTTCGGCGACGCCGACTGGGCCCTGATGATTGGCGCCAAGCCCCGCGGCCCCGGC
ATGGAGCGCGCGGACCTGCTGCAGCAGAACGGCGAGATCTTCCAGGTCCAGGGCCGCGCC
CTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000123A_C01 KCC000123A_c01
         (723 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC19083.2| NADP-malate dehydrogenase [Chlamydomonas reinhar...   352  3e-96
emb|CAC15546.1| plastidic NADP-dependent malate dehydrogenase [D...   244  1e-63
emb|CAC16124.1| NADP-dependent malate dehydrogenase [Scherffelia...   217  2e-55
emb|CAD54631.1| NADP-dependant malate dehydrogenase [Oplismenus ...   209  3e-53
emb|CAC87708.1| NADP-Malate deshydrogenase [Vetiveria zizanioides]    207  1e-52

>emb|CAC19083.2| NADP-malate dehydrogenase [Chlamydomonas reinhardtii]
          Length = 415

 Score =  352 bits (904), Expect = 3e-96
 Identities = 182/182 (100%), Positives = 182/182 (100%)
 Frame = +1

Query: 178 MALNMKQQQAGLSRKAARSVSSRAPVVVRAVAAPVAPAAEAEAKKAYGVFRLSYDTQNED 357
           MALNMKQQQAGLSRKAARSVSSRAPVVVRAVAAPVAPAAEAEAKKAYGVFRLSYDTQNED
Sbjct: 1   MALNMKQQQAGLSRKAARSVSSRAPVVVRAVAAPVAPAAEAEAKKAYGVFRLSYDTQNED 60

Query: 358 ASLTRSWKKTVKVAVTGASGNIANHLLFMLASGEVYGKDQPIALQLLGSERSKEALEGVA 537
           ASLTRSWKKTVKVAVTGASGNIANHLLFMLASGEVYGKDQPIALQLLGSERSKEALEGVA
Sbjct: 61  ASLTRSWKKTVKVAVTGASGNIANHLLFMLASGEVYGKDQPIALQLLGSERSKEALEGVA 120

Query: 538 MELEDSLYPLLREVSIGTDPYEVFGDADWALMIGAKPRGPGMERADLLQQNGEIFQVQGR 717
           MELEDSLYPLLREVSIGTDPYEVFGDADWALMIGAKPRGPGMERADLLQQNGEIFQVQGR
Sbjct: 121 MELEDSLYPLLREVSIGTDPYEVFGDADWALMIGAKPRGPGMERADLLQQNGEIFQVQGR 180

Query: 718 AL 723
           AL
Sbjct: 181 AL 182

>emb|CAC15546.1| plastidic NADP-dependent malate dehydrogenase [Dunaliella
           bioculata]
          Length = 429

 Score =  244 bits (623), Expect = 1e-63
 Identities = 125/181 (69%), Positives = 144/181 (79%)
 Frame = +1

Query: 181 ALNMKQQQAGLSRKAARSVSSRAPVVVRAVAAPVAPAAEAEAKKAYGVFRLSYDTQNEDA 360
           A N++   A   +  + + + RA  VVRAV AP       +A K +GVFRLSYD  NED 
Sbjct: 21  AFNVRGNVARKVQAGSNAAARRASSVVRAVDAP------EKAAKQFGVFRLSYDVNNEDK 74

Query: 361 SLTRSWKKTVKVAVTGASGNIANHLLFMLASGEVYGKDQPIALQLLGSERSKEALEGVAM 540
            + ++WKKT+ VAVTGASG IANHLLFMLASGEVYGKDQPIALQLLGSERS EALEGVAM
Sbjct: 75  EMMKNWKKTINVAVTGASGMIANHLLFMLASGEVYGKDQPIALQLLGSERSYEALEGVAM 134

Query: 541 ELEDSLYPLLREVSIGTDPYEVFGDADWALMIGAKPRGPGMERADLLQQNGEIFQVQGRA 720
           ELEDSLYPLLRE SIG DPYE+F  ADWALM+GA+PRGPGMER+DL+Q+NG+IFQ QGRA
Sbjct: 135 ELEDSLYPLLREXSIGIDPYEIFAGADWALMVGAQPRGPGMERSDLIQKNGQIFQTQGRA 194

Query: 721 L 723
           L
Sbjct: 195 L 195

>emb|CAC16124.1| NADP-dependent malate dehydrogenase [Scherffelia dubia]
          Length = 401

 Score =  217 bits (552), Expect = 2e-55
 Identities = 119/170 (70%), Positives = 131/170 (77%), Gaps = 3/170 (1%)
 Frame = +1

Query: 223 AARSVSSRAPVVVRAVAAPVAPAAEAE---AKKAYGVFRLSYDTQNEDASLTRSWKKTVK 393
           AA SVS RA    R  A  V  AA AE   A K+YGVF+LSY   NE    T+SWK T+ 
Sbjct: 2   AAASVS-RAANKGRNAALSVRAAAGAEVAAASKSYGVFKLSYSIDNEPKQRTQSWKATIN 60

Query: 394 VAVTGASGNIANHLLFMLASGEVYGKDQPIALQLLGSERSKEALEGVAMELEDSLYPLLR 573
           V V+GA+G I+NHLLFMLASG V+G DQPIAL+LLGSERSKEALEGVAMELEDSLYPLLR
Sbjct: 61  VVVSGAAGQISNHLLFMLASGSVFGNDQPIALRLLGSERSKEALEGVAMELEDSLYPLLR 120

Query: 574 EVSIGTDPYEVFGDADWALMIGAKPRGPGMERADLLQQNGEIFQVQGRAL 723
           EV IG DP EVF +ADWAL+IGAKPRGPGMERADLL  NG IF  QG+AL
Sbjct: 121 EVVIGIDPLEVFAEADWALLIGAKPRGPGMERADLLDINGRIFVDQGQAL 170

>emb|CAD54631.1| NADP-dependant malate dehydrogenase [Oplismenus compositus]
          Length = 419

 Score =  209 bits (532), Expect = 3e-53
 Identities = 108/151 (71%), Positives = 125/151 (82%)
 Frame = +1

Query: 271 AAPVAPAAEAEAKKAYGVFRLSYDTQNEDASLTRSWKKTVKVAVTGASGNIANHLLFMLA 450
           AA VA  A A  K+ +GVF  +YD + +D   TRSWKK V +AV+GA+G I+NHLLF LA
Sbjct: 48  AATVAAEAPASRKECFGVFCTTYDLKADDK--TRSWKKLVNIAVSGAAGMISNHLLFKLA 105

Query: 451 SGEVYGKDQPIALQLLGSERSKEALEGVAMELEDSLYPLLREVSIGTDPYEVFGDADWAL 630
           SGEV+G+DQPIAL+LLGSERS +ALEGVAMELEDSLYPLLREV+IG DPYEVF DADWAL
Sbjct: 106 SGEVFGQDQPIALKLLGSERSLQALEGVAMELEDSLYPLLREVNIGIDPYEVFEDADWAL 165

Query: 631 MIGAKPRGPGMERADLLQQNGEIFQVQGRAL 723
           +IGAKPRGPGMERA LL  NG+IF  QG+AL
Sbjct: 166 LIGAKPRGPGMERAALLDINGQIFADQGKAL 196

>emb|CAC87708.1| NADP-Malate deshydrogenase [Vetiveria zizanioides]
          Length = 409

 Score =  207 bits (528), Expect = 1e-52
 Identities = 109/151 (72%), Positives = 122/151 (80%)
 Frame = +1

Query: 271 AAPVAPAAEAEAKKAYGVFRLSYDTQNEDASLTRSWKKTVKVAVTGASGNIANHLLFMLA 450
           A  VA  A A  K  +GVF  +YD + ED   TRSWKK V VAV+GA+G I+NHLLF LA
Sbjct: 30  ATAVAAEAPASRKDCFGVFCTTYDLKAEDK--TRSWKKLVNVAVSGAAGMISNHLLFKLA 87

Query: 451 SGEVYGKDQPIALQLLGSERSKEALEGVAMELEDSLYPLLREVSIGTDPYEVFGDADWAL 630
           SGEV+G+DQPIAL+LLGSERS +ALEGVAMELEDSLYPLLREVSIG DPYEVF D DWAL
Sbjct: 88  SGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWAL 147

Query: 631 MIGAKPRGPGMERADLLQQNGEIFQVQGRAL 723
           +IGAKPRGPGMERA LL  NG+IF  QG+AL
Sbjct: 148 LIGAKPRGPGMERAALLDINGQIFADQGKAL 178



EST assemble image


clone accession position
1 MXL099e11_r BP098815 1 377
2 LCL083c03_r AV630719 5 436
3 MXL063d09_r BP096706 7 371
4 MXL045e05_r BP095668 13 239
5 LCL064f01_r AV629722 17 368
6 CL58b01_r AV396187 22 501
7 LCL045f04_r AV628687 25 295
8 LCL079h09_r AV630507 26 252
9 LCL087d04_r AV630995 27 346
10 LCL077b08_r AV630317 27 445
11 LCL046c02_r AV628725 33 547
12 LCL082f03_r AV630681 37 425
13 LCL069a08_r AV629918 37 445
14 LCL028a08_r AV627524 37 513
15 LCL025g04_r AV627370 38 470
16 LCL008d03_r AV626393 40 545
17 LCL098g12_r AV631727 40 411
18 LCL075e06_r AV630216 40 445
19 LCL052e10_r AV629122 40 539
20 LCL057a03_r AV629345 40 533
21 LCL029c04_r AV627598 41 545
22 LCL059f03_r AV629484 43 393
23 MXL096f03_r BP098634 45 406
24 MXL002b04_r BP093011 47 459
25 LCL079g04_r AV630495 47 235
26 LCL023h02_r AV627256 54 440
27 CL35c05_r AV395073 55 553
28 CL05g12_r AV393577 63 466
29 LCL096b02_r AV631554 67 545
30 LCL066h07_r AV629823 67 546
31 MXL033d03_r BP094959 139 519
32 LCL029e05_r AV627613 144 689
33 HCL028e07_r AV641145 153 590
34 MXL090d04_r BP098262 155 533
35 LCL033a10_r AV627863 211 544
36 LCL033d06_r AV627887 299 723




Chlamydomonas reinhardtii
Kazusa DNA Research Institute