Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000116A_C01 KCC000116A_c01
(526 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_419667.1| hypothetical protein [Caulobacter crescentus CB... 42 0.001
ref|ZP_00028573.1| COG3332: Uncharacterized conserved protein [B... 40 0.014
ref|XP_225959.2| similar to putative DEIH-box RNA/DNA helicase [... 40 0.024
gb|AAA92511.1| trithorax 37 0.15
ref|NP_823186.1| hypothetical protein [Streptomyces avermitilis ... 36 0.34
>ref|NP_419667.1| hypothetical protein [Caulobacter crescentus CB15]
gi|25400099|pir||G87354 hypothetical protein CC0850
[imported] - Caulobacter crescentus
gi|13422105|gb|AAK22835.1| hypothetical protein
[Caulobacter crescentus CB15]
Length = 440
Score = 42.4 bits (98), Expect(2) = 0.001
Identities = 34/93 (36%), Positives = 40/93 (42%), Gaps = 1/93 (1%)
Frame = +2
Query: 239 RRGGHSALRVTRGLRHRHHPRGTGLVQQGHCRHVRAVPRRRLALPDGVSPGPD*GHTQAA 418
R+G + RV R R RHH RG G Q GH R VR P R+ A+ + G
Sbjct: 50 RKGRRTLARVRR--RRRHHRRGRGRDQPGHRRLVRGQPARQAAVVIDLEQG--------- 98
Query: 419 AHSGAGLRLAHIQQGPGR-RAASGCARRGVTRH 514
RL H+Q GR R A G A R H
Sbjct: 99 -------RLDHVQDQAGRARGAVGVAGRQPAGH 124
Score = 21.2 bits (43), Expect(2) = 0.001
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = +3
Query: 81 PAYVPPARRGVA 116
P +PPAR GVA
Sbjct: 10 PILLPPAREGVA 21
>ref|ZP_00028573.1| COG3332: Uncharacterized conserved protein [Burkholderia fungorum]
Length = 479
Score = 40.4 bits (93), Expect = 0.014
Identities = 32/94 (34%), Positives = 42/94 (44%)
Frame = +2
Query: 245 GGHSALRVTRGLRHRHHPRGTGLVQQGHCRHVRAVPRRRLALPDGVSPGPD*GHTQAAAH 424
GG R +RG R HHP G V+ + + RA RR P G+ P G TQ +
Sbjct: 25 GGVGLARHSRG-RTAHHPAGGRAVRAANGQFRRA---RRGEFPQGLLSRPGGGGTQPVSR 80
Query: 425 SGAGLRLAHIQQGPGRRAASGCARRGVTRHARNG 526
+ AH+ + G RA G RRG R+G
Sbjct: 81 HD---QAAHLARHRGGRARHGARRRGTVPFGRSG 111
>ref|XP_225959.2| similar to putative DEIH-box RNA/DNA helicase [Rattus norvegicus]
Length = 296
Score = 39.7 bits (91), Expect = 0.024
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +3
Query: 342 EQFPGGDWRCQMVFPPGLTKDTRKLLHIVAQGLGLPTFSKGLGEERRLAV 491
E+F GD R +M FP LT R +H ++Q LGL + SKG G R L V
Sbjct: 58 ERFRYGDQR-EMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTV 106
>gb|AAA92511.1| trithorax
Length = 1012
Score = 37.0 bits (84), Expect = 0.15
Identities = 35/131 (26%), Positives = 58/131 (43%), Gaps = 3/131 (2%)
Frame = -1
Query: 523 ISGVPRNATPCTARRRSSP--RPLLNVGKPKPCATMCSSLRVSLVRPGGNTIWQRQSPPG 350
IS VPR TP + + SP RPL + G P P ++ SL+ G +I R+
Sbjct: 823 ISKVPRIRTPSYSPTQRSPGCRPLPSAGSPTPTTHEIVTVGDSLLSSGLRSIGSRRHSTS 882
Query: 349 NCS-DVAAVALLNQSSTARMVSVSQSAGNSKCRVATSPVCSDSIVSRMVSGQPATSNGPL 173
+ S + + +++ T S + + S AT S +V ++ P S+ L
Sbjct: 883 SLSPQRSKLRIMSPMRTGNTYSRNNVSSVSTTGTATDLESSAKVVDHVLG--PLNSSTSL 940
Query: 172 GVKWSTTSQMR 140
G ST+S ++
Sbjct: 941 GQNTSTSSNLQ 951
>ref|NP_823186.1| hypothetical protein [Streptomyces avermitilis MA-4680]
gi|29605656|dbj|BAC69721.1| hypothetical protein
[Streptomyces avermitilis MA-4680]
Length = 208
Score = 35.8 bits (81), Expect = 0.34
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = -2
Query: 504 TPRRAQPDAALRPGPC*MWASLSPAPLCAAACVCP*S-GPGETPSGSASRRRGTALTWRQ 328
+P +A + R GP AS S P+ AA P S G G + +GS + R R+
Sbjct: 91 SPCQALCTSRRREGP----ASPSSPPIRAANTPDPASAGAGVSTTGSGASRMRCPAGVRK 146
Query: 327 WPC*TSPVPRGWCRCRSPRVTRSAEW 250
W C RG CR SPR TR+A W
Sbjct: 147 WSC----GGRG-CRKASPRFTRAASW 167
