Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000113A_C01 KCC000113A_c01
(834 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA78585.1| hypothetical protein [Chlamydomonas sp. HS-5] 140 2e-42
gb|AAP79212.1| photosystem II protein PSII10 [Bigelowiella natans] 117 1e-30
gb|AAO32060.1| photosystem II 10kDa polypeptide [Brassica rapa s... 81 2e-14
sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 81 2e-14
gb|AAN60205.1| photosystem II 10 kDa protein [Xerophyta humilis] 75 2e-14
>dbj|BAA78585.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 128
Score = 140 bits (353), Expect(2) = 2e-42
Identities = 64/86 (74%), Positives = 70/86 (80%)
Frame = +3
Query: 90 PVASGGGKTDITKVGLNSIEDPVVKQNLMGKSRFMNKKDWKDASGRKGKGYGVYRYEDKY 269
PVASGGGK DITK GL I+DP V+QNL G+SR+M K+W D GRKGKGYGVYR+EDKY
Sbjct: 13 PVASGGGKVDITKAGLEGIDDPTVQQNLKGRSRYMKDKNWVDPQGRKGKGYGVYRFEDKY 72
Query: 270 GANVDGYSPIYTPDLWTESGDSYTPG 347
GANVDGYSPIYT D WTESG SY G
Sbjct: 73 GANVDGYSPIYTADQWTESGASYKLG 98
Score = 55.5 bits (132), Expect(2) = 2e-42
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +2
Query: 350 TKGLIAWAGLVLVLLAVGVNLIISTSQLG 436
TKGLIAWAGLVLVLL VGVNL+ISTSQLG
Sbjct: 99 TKGLIAWAGLVLVLLGVGVNLVISTSQLG 127
>gb|AAP79212.1| photosystem II protein PSII10 [Bigelowiella natans]
Length = 197
Score = 117 bits (292), Expect(2) = 1e-30
Identities = 51/79 (64%), Positives = 63/79 (79%)
Frame = +3
Query: 111 KTDITKVGLNSIEDPVVKQNLMGKSRFMNKKDWKDASGRKGKGYGVYRYEDKYGANVDGY 290
+ DI K GL SI D ++QNL G+SR M+ K+W D GRKG+GYGVYR++ KYGANVDGY
Sbjct: 91 QVDIKKKGLESISDETIQQNLQGRSRAMSDKNWVDPQGRKGRGYGVYRFQKKYGANVDGY 150
Query: 291 SPIYTPDLWTESGDSYTPG 347
SPIYTPD+W+ESG+SY G
Sbjct: 151 SPIYTPDIWSESGNSYKLG 169
Score = 39.3 bits (90), Expect(2) = 1e-30
Identities = 19/28 (67%), Positives = 21/28 (74%)
Frame = +2
Query: 350 TKGLIAWAGLVLVLLAVGVNLIISTSQL 433
T LIAW LV+ LL +G NLIISTSQL
Sbjct: 170 TNALIAWLVLVVTLLGIGANLIISTSQL 197
>gb|AAO32060.1| photosystem II 10kDa polypeptide [Brassica rapa subsp. pekinensis]
Length = 137
Score = 81.3 bits (199), Expect = 2e-14
Identities = 37/57 (64%), Positives = 43/57 (74%)
Frame = +3
Query: 177 GKSRFMNKKDWKDASGRKGKGYGVYRYEDKYGANVDGYSPIYTPDLWTESGDSYTPG 347
G + M+ +D DASGRKGKGYGVY++ DKYGANVDGYSPIY D W+ SGD Y G
Sbjct: 51 GVNGSMDLRDGLDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGG 107
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplast precursor
gi|967968|gb|AAA74957.1| photosystem II 10kDa
polypeptide
Length = 141
Score = 81.3 bits (199), Expect = 2e-14
Identities = 37/57 (64%), Positives = 43/57 (74%)
Frame = +3
Query: 177 GKSRFMNKKDWKDASGRKGKGYGVYRYEDKYGANVDGYSPIYTPDLWTESGDSYTPG 347
G + M+ +D DASGRKGKGYGVY++ DKYGANVDGYSPIY D W+ SGD Y G
Sbjct: 55 GVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGG 111
>gb|AAN60205.1| photosystem II 10 kDa protein [Xerophyta humilis]
Length = 139
Score = 75.5 bits (184), Expect(2) = 2e-14
Identities = 35/52 (67%), Positives = 39/52 (74%)
Frame = +3
Query: 192 MNKKDWKDASGRKGKGYGVYRYEDKYGANVDGYSPIYTPDLWTESGDSYTPG 347
MN DASGRK KG GVY++ DKYGANVDGYSPIY+PD W+ SGD Y G
Sbjct: 58 MNLPAGLDASGRKQKGKGVYQFVDKYGANVDGYSPIYSPDEWSPSGDVYVGG 109
Score = 25.8 bits (55), Expect(2) = 2e-14
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 350 TKGLIAWAGLVLVLLAVGVNLIISTSQL 433
T GLI WA + LL G L+ STS L
Sbjct: 110 TTGLIVWAITLAGLLGGGALLVYSTSAL 137
