KCC000112A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000112A_C01 KCC000112A_c01
atcttattgcctggttctcaccgtcCCACACTCTGAATCTAGCTCCTTGCGTCACTCGGA
AATGCTCGCAGCGGCTCCATATCAACGTTAGGGGCCAACTTCGTGCGCGGCTGAAGAGGA
CCTATGTTTGCTTCTGGGCGGCCGCTGCTGCACGGAAGCAGCAGCGGCGGCATCATCTGC
GCGACTCCTTGCGCCTCCGGGCCAAAGCGGTCTTTTCCAGCCGCGAGCAGCGCCAGCGCA
GGACCCTACAGCTGCCCATTACGGCATGCGACATCGTCTCGTTTATTATATGGTGGCTGC
TGGACGCCACGCAGCGCGGCAGGAGCGAACAGCCCGTCCGCGGTGGAGAGCAATGCGTCC
ACGCTTGCGGGCACAGCGCTTCTAACAGCGCAAGGCCTGGTAAATAGCTATAATGGCGCC
AGTAGACCCACTCACGTTATAGATTTGCCTGGATCTGCGACCGCGACCGGTCACAGGGAC
CAGGCAGAGCCCTTCTTGAGCTGGGAGCACACGGACCCGCAGGAGCTCGCCCACACCCTC
GACGTGCGCGTGCCCAGCGCAGCGTCCGCCTCCACCTCGCTAGCACCACCCGACGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000112A_C01 KCC000112A_c01
         (596 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T46707 proteophosphoglycan, membrane-associated [imported] ...    41  0.011
dbj|BAC84515.1| hypothetical protein [Oryza sativa (japonica cul...    41  0.015
emb|CAB46679.1| proteophosphoglycan [Leishmania major]                 40  0.019
gb|AAK31375.1|AC084329_1 ppg3 [Leishmania major]                       39  0.055
gb|AAH05441.1| Mucin 1, transmembrane [Mus musculus]                   38  0.094

>pir||T46707 proteophosphoglycan, membrane-associated [imported] - Leishmania
           major (fragment) gi|5420389|emb|CAB46680.1|
           proteophosphoglycan [Leishmania major]
          Length = 383

 Score = 41.2 bits (95), Expect = 0.011
 Identities = 33/144 (22%), Positives = 65/144 (44%)
 Frame = +1

Query: 157 SSSGGIICATPCASGPKRSFPAASSASAGPYSCPLRHATSSRLLYGGCWTPRSAAGANSP 336
           SSS     ++  A     S P+ASS+SA   S     A+SS        +  SA+ +++P
Sbjct: 6   SSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAP 65

Query: 337 SAVESNASTLAGTALLTAQGLVNSYNGASRPTHVIDLPGSATATGHRDQAEPFLSWEHTD 516
           S+  S+A + + ++  ++     S + +S P+     P +++++     +    +   + 
Sbjct: 66  SSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSA 125

Query: 517 PQELAHTLDVRVPSAASASTSLAP 588
           P   +        SA S+S+S AP
Sbjct: 126 PSSSSSAPSASSSSAPSSSSSSAP 149

 Score = 37.4 bits (85), Expect = 0.16
 Identities = 47/190 (24%), Positives = 80/190 (41%), Gaps = 9/190 (4%)
 Frame = +1

Query: 52  SLGNARSGSISTLGANFVRG*RGPMFASGRPLLHGSSSGGIICATPCASGPKR-----SF 216
           S  ++ + S S+  A        P  +S  P    SS+     + P AS         S 
Sbjct: 58  SASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSA 117

Query: 217 PAASSASAGPYSCPLRHATSSRLLYGGCWTPRSAAGANSPSAVESNA-STLAGTALLTAQ 393
           P+ASS+SA   S     A+SS        +  SA+ +++PS+  S+A S  + +A  ++ 
Sbjct: 118 PSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSS 177

Query: 394 GLVNSYNGASRPTHVIDLP--GSATATGHRDQAEPFLSWEHTDPQELAHTLDVRVPSAAS 567
               S + +S P+     P   S++A      + P  S         A +     PS++S
Sbjct: 178 SSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSAS------SSSAPSSSSSAPSSSS 231

Query: 568 ASTSLAP-PD 594
            +T++ P PD
Sbjct: 232 TTTTMDPTPD 241

>dbj|BAC84515.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 160

 Score = 40.8 bits (94), Expect = 0.015
 Identities = 31/97 (31%), Positives = 44/97 (44%), Gaps = 4/97 (4%)
 Frame = -3

Query: 372 ARKRGRIALHRGRAVRSCRAAWRPAATI**TRRCRMP*WAAVGSCAGAARGWKRPL---- 205
           +R+RG + L RG ++R  R   + A +   +R      W   G  +G AR W+ P     
Sbjct: 32  SRRRGGLQLARGGSLRRARGGEKAAQSPPQSR------WRGGGRLSGLAR-WRLPASSQR 84

Query: 204 WPGGARSRADDAAAAASVQQRPPRSKHRSSSAAHEVG 94
           WP   + R  D AAA    Q PP S+ R   A  + G
Sbjct: 85  WPDTGKGRRSDEAAA----QSPPHSRRRGGLAPLQTG 117

>emb|CAB46679.1| proteophosphoglycan [Leishmania major]
          Length = 873

 Score = 40.4 bits (93), Expect = 0.019
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 2/155 (1%)
 Frame = +1

Query: 130  ASGRPLLHGSSSGGIICATPCASGPKRSFPAASSASAGPYSCPLRHATSSRLLYGGCWTP 309
            AS       SSS     ++  A     S P+ASS+SA   S     A+SS        + 
Sbjct: 672  ASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSA 731

Query: 310  RSAAGANSPSAVESNASTLAGTALLTAQGLVNSYNGASRPTHVIDLP--GSATATGHRDQ 483
             SA+ +++PS+  S+A + + ++  ++     S + +S P+     P   S++A      
Sbjct: 732  PSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSS 791

Query: 484  AEPFLSWEHTDPQELAHTLDVRVPSAASASTSLAP 588
            + P  S         +        SA S+S+S AP
Sbjct: 792  SAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAP 826

 Score = 40.4 bits (93), Expect = 0.019
 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
 Frame = +1

Query: 157  SSSGGIICATPCASGPKRSFPAASSASAGPYSCPLRHATSSRLLYGGCWTPRSAAGANSP 336
            SSS     ++  AS    S P+ASS+SA   S     A+SS        +  SA+ +++P
Sbjct: 619  SSSSAPSASSSSASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAP 678

Query: 337  SAVESNASTLAGTALLTAQGLVNSYNGASRPTHVIDLP--GSATATGHRDQAEPFLSWEH 510
            S+  S+A + + ++  ++     S + +S P+     P   S++A      + P  S   
Sbjct: 679  SSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSAS-SS 737

Query: 511  TDPQELAHTLDVRVPSAASASTSLAP 588
            + P   + +      S+A +S+S AP
Sbjct: 738  SAPSSSSSSAPSASSSSAPSSSSSAP 763

 Score = 35.4 bits (80), Expect = 0.61
 Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 2/158 (1%)
 Frame = +1

Query: 121  PMFASGRPLLHGSSSGGIICATPCASGPKRSFPAASSASAGPYSCPLRHATSSRLLYGGC 300
            P  +S       SSS     ++   S    S P+ASS+SA   S     A+SS       
Sbjct: 654  PSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSS 713

Query: 301  WTPRSAAGANSPSAVESNA-STLAGTALLTAQGLVNSYNGASRPTHVIDLP-GSATATGH 474
              P SA+ +++PS+  S+A S  + +A  ++     S + +S P+     P  S+++   
Sbjct: 714  SAP-SASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 772

Query: 475  RDQAEPFLSWEHTDPQELAHTLDVRVPSAASASTSLAP 588
               + P  S         +        SA S+S+S AP
Sbjct: 773  SSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAP 810

 Score = 35.0 bits (79), Expect = 0.80
 Identities = 39/153 (25%), Positives = 64/153 (41%)
 Frame = +1

Query: 130  ASGRPLLHGSSSGGIICATPCASGPKRSFPAASSASAGPYSCPLRHATSSRLLYGGCWTP 309
            AS       SSS     ++   S    S P+ASS+SA   S     + SS        + 
Sbjct: 641  ASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSA 700

Query: 310  RSAAGANSPSAVESNASTLAGTALLTAQGLVNSYNGASRPTHVIDLPGSATATGHRDQAE 489
             SA+ +++PS+  S  S  + +A  ++     S + +S P+       S++A      + 
Sbjct: 701  PSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPS-----SSSSSAPSASSSSA 755

Query: 490  PFLSWEHTDPQELAHTLDVRVPSAASASTSLAP 588
            P  S   + P   + +      SA SAS+S AP
Sbjct: 756  P--SSSSSAPSASSSSAPSSSSSAPSASSSSAP 786

 Score = 34.7 bits (78), Expect = 1.0
 Identities = 42/157 (26%), Positives = 68/157 (42%), Gaps = 1/157 (0%)
 Frame = +1

Query: 121  PMFASGRPLLHGSSSGGIICATPCASGPKRSFPAASSASAGPYSCPLRHATSSRLLYGGC 300
            P  +S       SSS     ++   S    S P+ASS+SA   S     A+SS       
Sbjct: 716  PSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSS 775

Query: 301  WTPRSAAGANSPSAVESNA-STLAGTALLTAQGLVNSYNGASRPTHVIDLPGSATATGHR 477
              P SA+ +++PS+  S+A S  + +A  ++     S + +S P+       S++A    
Sbjct: 776  SAP-SASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPS-----SSSSSAPSAS 829

Query: 478  DQAEPFLSWEHTDPQELAHTLDVRVPSAASASTSLAP 588
              + P  S   + P   + +      SA SAS+S AP
Sbjct: 830  SSSAPSSS-SSSAPSASSSSASSSSSSAPSASSSSAP 865

>gb|AAK31375.1|AC084329_1 ppg3 [Leishmania major]
          Length = 1325

 Score = 38.9 bits (89), Expect = 0.055
 Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 5/185 (2%)
 Frame = +1

Query: 49   ASLGNARSGSISTLGANFVRG*RGPMFASGRPLLHGSSSGGIICATPCASGPKR-----S 213
            AS  +A S S S   A+       P  +S  P    SS+     + P AS         S
Sbjct: 688  ASSSSAPSSSSSAPSASSSSA---PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSS 744

Query: 214  FPAASSASAGPYSCPLRHATSSRLLYGGCWTPRSAAGANSPSAVESNASTLAGTALLTAQ 393
             P+ASS+SA   S     A+SS        +  SA+ +++PS+  S  S  + +A  ++ 
Sbjct: 745  APSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSS 804

Query: 394  GLVNSYNGASRPTHVIDLPGSATATGHRDQAEPFLSWEHTDPQELAHTLDVRVPSAASAS 573
                S + +S P+     P +++++          S   + P   + +      SA SAS
Sbjct: 805  SSAPSASSSSAPSSSSSAPSASSSSAP--------SSSSSAPSASSSSAPSSSSSAPSAS 856

Query: 574  TSLAP 588
            +S AP
Sbjct: 857  SSSAP 861

 Score = 38.1 bits (87), Expect = 0.094
 Identities = 45/185 (24%), Positives = 78/185 (41%), Gaps = 5/185 (2%)
 Frame = +1

Query: 49   ASLGNARSGSISTLGANFVRG*RGPMFASGRPLLHGSSSGGIICATPCASGPKR-----S 213
            AS  +A S S S   A+       P  +S  P    SS+     + P AS         S
Sbjct: 703  ASSSSAPSSSSSAPSASSSSA---PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSS 759

Query: 214  FPAASSASAGPYSCPLRHATSSRLLYGGCWTPRSAAGANSPSAVESNASTLAGTALLTAQ 393
             P+ASS+SA   S     + SS        +  SA+ +++PS+  S+A + + ++  ++ 
Sbjct: 760  APSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSS 819

Query: 394  GLVNSYNGASRPTHVIDLPGSATATGHRDQAEPFLSWEHTDPQELAHTLDVRVPSAASAS 573
                S + +S P+     P +++++          S   + P   + +      SA SAS
Sbjct: 820  SSAPSASSSSAPSSSSSAPSASSSSAP--------SSSSSAPSASSSSAPSSSSSAPSAS 871

Query: 574  TSLAP 588
            +S AP
Sbjct: 872  SSSAP 876

 Score = 36.6 bits (83), Expect = 0.27
 Identities = 39/146 (26%), Positives = 66/146 (44%), Gaps = 2/146 (1%)
 Frame = +1

Query: 157  SSSGGIICATPCASGPKRSFPAASSASAGPYSCPLRHATSSRLLYGGCWTPRSAAGANSP 336
            SSS     ++  AS    S P+ASS+SA   S     A+SS         P SA+ +++P
Sbjct: 666  SSSSAPSASSSSASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAP-SASSSSAP 724

Query: 337  SAVESNASTLAGTALLTAQGLVNSYNGASRPTHVIDLP--GSATATGHRDQAEPFLSWEH 510
            S+  S+A + + ++  ++     S + +S P+     P   S++A      + P  S   
Sbjct: 725  SS-SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSAS-SS 782

Query: 511  TDPQELAHTLDVRVPSAASASTSLAP 588
            + P   +        SA S+S+S AP
Sbjct: 783  SAPSSSSSAPSASSSSAPSSSSSSAP 808

 Score = 36.6 bits (83), Expect = 0.27
 Identities = 50/186 (26%), Positives = 79/186 (41%), Gaps = 6/186 (3%)
 Frame = +1

Query: 49   ASLGNARSGSISTLGANFVRG*RGPMFASGRPLLHGSSSGGIICATPCASGPKR-----S 213
            AS  +A S S S   A+       P  +S  P    SS+     + P AS         S
Sbjct: 810  ASSSSAPSSSSSAPSASSSSA---PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSS 866

Query: 214  FPAASSASAGPYSCPLRHATSSRLLYGGCWTPRSAAGANSPSAVESNA-STLAGTALLTA 390
             P+ASS+SA   S     A+SS        +  SA+ +++PS+  S+A S  + +A  ++
Sbjct: 867  APSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSS 926

Query: 391  QGLVNSYNGASRPTHVIDLPGSATATGHRDQAEPFLSWEHTDPQELAHTLDVRVPSAASA 570
                 S + +S P+       S++A      + P  S   + P   + +      SA SA
Sbjct: 927  SSSAPSASSSSAPS-----SSSSSAPSASSSSAP--SSSSSAPSASSSSAPSSSSSAPSA 979

Query: 571  STSLAP 588
            S+S AP
Sbjct: 980  SSSSAP 985

 Score = 35.8 bits (81), Expect = 0.47
 Identities = 37/156 (23%), Positives = 65/156 (40%)
 Frame = +1

Query: 121  PMFASGRPLLHGSSSGGIICATPCASGPKRSFPAASSASAGPYSCPLRHATSSRLLYGGC 300
            P  +S       SSS     ++   S    S P+ASS+SA   S     + SS       
Sbjct: 899  PSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSS 958

Query: 301  WTPRSAAGANSPSAVESNASTLAGTALLTAQGLVNSYNGASRPTHVIDLPGSATATGHRD 480
             +  SA+ +++PS+  S  S  + +A  ++     S + +S P+     P +++++    
Sbjct: 959  SSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAP-- 1016

Query: 481  QAEPFLSWEHTDPQELAHTLDVRVPSAASASTSLAP 588
                  S   + P   + +      SA SAS+S AP
Sbjct: 1017 ------SSSSSAPSASSSSAPSSSSSAPSASSSSAP 1046

 Score = 35.4 bits (80), Expect = 0.61
 Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 2/155 (1%)
 Frame = +1

Query: 130  ASGRPLLHGSSSGGIICATPCASGPKRSFPAASSASAGPYSCPLRHATSSRLLYGGCWTP 309
            AS       SSS     ++   S    S P+ASS+SA   S     A+SS         P
Sbjct: 779  ASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAP 838

Query: 310  RSAAGANSPSAVESNASTLAGTALLTAQGLVNSYNGASRPTHVIDLP--GSATATGHRDQ 483
             SA+ +++PS+  S+A + + ++  ++     S + +S P+     P   S++A      
Sbjct: 839  -SASSSSAPSS-SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSS 896

Query: 484  AEPFLSWEHTDPQELAHTLDVRVPSAASASTSLAP 588
            + P  S         +        SA S+S+S AP
Sbjct: 897  SAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAP 931

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 36/156 (23%), Positives = 65/156 (41%)
 Frame = +1

Query: 121  PMFASGRPLLHGSSSGGIICATPCASGPKRSFPAASSASAGPYSCPLRHATSSRLLYGGC 300
            P  +S       SSS     ++   S    S P+ASS+SA   S     + SS       
Sbjct: 883  PSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSS------ 936

Query: 301  WTPRSAAGANSPSAVESNASTLAGTALLTAQGLVNSYNGASRPTHVIDLPGSATATGHRD 480
             +  S++ +++PSA  S+A + + +A   +     S + ++        P S++++    
Sbjct: 937  -SAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSA 995

Query: 481  QAEPFLSWEHTDPQELAHTLDVRVPSAASASTSLAP 588
             +    S   + P   + +      SA SAS+S AP
Sbjct: 996  SSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAP 1031

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 30/128 (23%), Positives = 58/128 (44%)
 Frame = +1

Query: 157  SSSGGIICATPCASGPKRSFPAASSASAGPYSCPLRHATSSRLLYGGCWTPRSAAGANSP 336
            SSS     ++  A     S P+ASS+SA   S     A+SS         P SA+ +++P
Sbjct: 1003 SSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAP-SASSSSAP 1061

Query: 337  SAVESNASTLAGTALLTAQGLVNSYNGASRPTHVIDLPGSATATGHRDQAEPFLSWEHTD 516
            S+  S+A + + ++  ++     S + +S P+        + + G      P+ +     
Sbjct: 1062 SSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSFLSGSGSDGGCHSDVPYYT----- 1116

Query: 517  PQELAHTL 540
            P ++AH++
Sbjct: 1117 PTQVAHSM 1124

>gb|AAH05441.1| Mucin 1, transmembrane [Mus musculus]
          Length = 631

 Score = 38.1 bits (87), Expect = 0.094
 Identities = 33/153 (21%), Positives = 65/153 (41%)
 Frame = +1

Query: 121 PMFASGRPLLHGSSSGGIICATPCASGPKRSFPAASSASAGPYSCPLRHATSSRLLYGGC 300
           P+ ++  P+ HG +S     AT  +     S    S  S+ P +     +TSS +++GG 
Sbjct: 100 PVNSASSPVAHGDTSSP---ATSLSKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGT 156

Query: 301 WTPRSAAGANSPSAVESNASTLAGTALLTAQGLVNSYNGASRPTHVIDLPGSATATGHRD 480
            +P ++   +S S+ + ++++   T            +G S P     +  +++   H D
Sbjct: 157 LSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDD 216

Query: 481 QAEPFLSWEHTDPQELAHTLDVRVPSAASASTS 579
            + P      T P E + +  V     +S +TS
Sbjct: 217 TSSP-----ATSPSEDSASSPVVHGGTSSPATS 244



EST assemble image


clone accession position
1 LCL100h04_r AV631855 1 413
2 CL05d03_r AV393551 26 556
3 LCL046e04_r AV628743 300 596




Chlamydomonas reinhardtii
Kazusa DNA Research Institute