KCC000111A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000111A_C01 KCC000111A_c01
gcctggcgtgagctctgcagctGGTGCGTTGGCGAAGCTAAGCGGGGAGAGCAGCAAGAG
CTGCGGCGTTGAGCTTTGCAGCACGGGGTGGACAGGGTGAGCCCCTGCACCGCCTACATT
CTTGGTTGCTAGGGACGCAGCGGCGGCTTGATGCAAGCAGTACGCGCGCGTTGGAAAACT
TAGGTTTAGGGTTGGGTACGTGATGGAAGGCTGCAGCGGCGCGCAGCTTATGAAGGGAAG
CGACGTTGCTTGAGAATGCGCGAGTCGCACGAGGGTAACTGTGTTCGTAGGCCGCAGACT
GCAGGCGATGGGCGTTTTTCCATAATGAGAGCCCACGCTTTTTTTGTGAGCCTGAACACG
CGCTTCAGGCGGAACCTTGGCGTCTGCTAAGCTGGAGACGCTTCATGTGTCCACGCGTTG
GCTGTTAGGGCAGGGTCAACGATCGGTCAAGGCTGAGGTATAggaaggcgtgacacagga
atgatttaaggcgtctttaatcggcgtcttgtactgtgtggtgtaaacaggctgcctcgt
gc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000111A_C01 KCC000111A_c01
         (542 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_305926.1| hypothetical protein XP_305926 [Homo sapiens]         39  0.058
pir||TVHUY2 protein-tyrosine kinase (EC 2.7.1.112) tyk2 - human ...    35  0.64
ref|NP_003322.2| tyrosine kinase 2 [Homo sapiens] gi|33860226|sp...    35  0.64
ref|XP_341413.1| similar to MECT1 protein [Rattus norvegicus]          34  1.1
ref|NP_851896.1| very large tegument protein [Cercopithecine her...    33  3.2

>ref|XP_305926.1| hypothetical protein XP_305926 [Homo sapiens]
          Length = 697

 Score = 38.5 bits (88), Expect = 0.058
 Identities = 30/116 (25%), Positives = 46/116 (38%), Gaps = 13/116 (11%)
 Frame = -3

Query: 312 PIACSLRPTNTVTLVRLAHSQATSLPFISCAPLQPSITYPTLNLSFPTRAYCLHQAAAAS 133
           P  C LRPT+  T +RL+ +    +      PL P+       LS  +R  C H+  A  
Sbjct: 272 PPGCPLRPTDDGTTLRLSSASPQMMAPPPGCPLHPTDDATAPRLSSASRRRC-HRPQAVL 330

Query: 132 LATKNVGGAGAHPVHPVLQSSTPQL-------------LLLSPLSFANAPAAELTP 4
              + +      P+HP    +TP+L             +L  P + A  P+  L P
Sbjct: 331 CVPQTMAPPPGCPLHPTDDGTTPRLSSASHRRWHRPQAVLCVPQTMAQPPSCPLRP 386

>pir||TVHUY2 protein-tyrosine kinase (EC 2.7.1.112) tyk2 - human
           gi|37504|emb|CAA38449.1| unnamed protein product [Homo
           sapiens]
          Length = 1187

 Score = 35.0 bits (79), Expect = 0.64
 Identities = 30/127 (23%), Positives = 52/127 (40%)
 Frame = -2

Query: 382 RQGSA*SACSGSQKKRGLSLWKNAHRLQSAAYEHSYPRATRAFSSNVASLHKLRAAAAFH 203
           R G   +  S  Q  +G+ L      L  A++E+ + +    F ++VASL +L      H
Sbjct: 124 RCGPPGTEASSDQTAQGMQL------LDPASFEYLFEQGKHEFVNDVASLWELSTEEEIH 177

Query: 202 HVPNPKPKFSNARVLLASSRRCVPSNQECRRCRGSPCPPRAAKLNAAALAALPA*LRQRT 23
           H  N     +   +   + R  +P  +  ++     C PR+ + +    +AL   LR R 
Sbjct: 178 HFKNESLGMAFLHLCHLALRHGIPLEEVAKKTSFKDCIPRSFRRHIRQHSALTR-LRLRN 236

Query: 22  SCRAHAR 2
             R   R
Sbjct: 237 VFRRFLR 243

>ref|NP_003322.2| tyrosine kinase 2 [Homo sapiens] gi|33860226|sp|P29597|TYK2_HUMAN
           Non-receptor tyrosine-protein kinase TYK2
           gi|15559784|gb|AAH14243.1| Tyrosine kinase 2 [Homo
           sapiens]
          Length = 1187

 Score = 35.0 bits (79), Expect = 0.64
 Identities = 30/127 (23%), Positives = 52/127 (40%)
 Frame = -2

Query: 382 RQGSA*SACSGSQKKRGLSLWKNAHRLQSAAYEHSYPRATRAFSSNVASLHKLRAAAAFH 203
           R G   +  S  Q  +G+ L      L  A++E+ + +    F ++VASL +L      H
Sbjct: 124 RCGPPGTEASSDQTAQGMQL------LDPASFEYLFEQGKHEFVNDVASLWELSTEEEIH 177

Query: 202 HVPNPKPKFSNARVLLASSRRCVPSNQECRRCRGSPCPPRAAKLNAAALAALPA*LRQRT 23
           H  N     +   +   + R  +P  +  ++     C PR+ + +    +AL   LR R 
Sbjct: 178 HFKNESLGMAFLHLCHLALRHGIPLEEVAKKTSFKDCIPRSFRRHIRQHSALTR-LRLRN 236

Query: 22  SCRAHAR 2
             R   R
Sbjct: 237 VFRRFLR 243

>ref|XP_341413.1| similar to MECT1 protein [Rattus norvegicus]
          Length = 335

 Score = 34.3 bits (77), Expect = 1.1
 Identities = 39/158 (24%), Positives = 61/158 (37%), Gaps = 10/158 (6%)
 Frame = -3

Query: 531 PVYTTQYKTPIKDALNHSCVTPSYTSALTDR*PCPNSQRVDT*SVSSLADAKVPPEARVQ 352
           P  T+  +T    AL+ S +TP+   + T      + +RV   +V  + +     +  + 
Sbjct: 141 PADTSWRRTNSDSALHQSTMTPTQAESFTGGPQDAHQKRVLLLTVPGMEETGSETDKTLS 200

Query: 351 AHKKSVGSHY-GKTPIAC---------SLRPTNTVTLVRLAHSQATSLPFISCAPLQPSI 202
             K+S  S   G  P +C         S    NT  L+   H+   SLP +S       +
Sbjct: 201 --KQSWDSKKAGSRPKSCEVPGINIFPSADQENTAALIPATHNTGGSLPDLSTIHFPSPL 258

Query: 201 TYPTLNLSFPTRAYCLHQAAAASLATKNVGGAGAHPVH 88
             P L+   P         +  SLA   VGG G  P+H
Sbjct: 259 PTP-LDPEEPPFPALTSSGSTGSLAHLGVGGTGQGPLH 295

>ref|NP_851896.1| very large tegument protein [Cercopithecine herpesvirus 1]
            gi|30844278|gb|AAP41454.1| very large tegument protein
            [Cercopithecine herpesvirus 1]
          Length = 3288

 Score = 32.7 bits (73), Expect = 3.2
 Identities = 31/85 (36%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
 Frame = +3

Query: 24   VRWRS*AGRAARAAALSFAARGGQGEPLHRLHSWL--LGTQRRLDASSTRALE------- 176
            V W   A R   A  L+ AAR G  +PL RLH+ L  LG  RR  A+  R+LE       
Sbjct: 1757 VDWLEHARRVFEAHPLT-AARDGSPDPLARLHARLDALGETRRRTAALRRSLEAAEAEWD 1815

Query: 177  ----NLGLGLGT*WKAAAARSL*RE 239
                  G   G  WK+  A    RE
Sbjct: 1816 EVWARFGRARGGAWKSPEALGAARE 1840



EST assemble image


clone accession position
1 CM069a11_r AV391177 1 578
2 MXL056e12_r BP096318 37 360
3 CL05c12_r AV393575 57 494




Chlamydomonas reinhardtii
Kazusa DNA Research Institute