KCC000088A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000088A_C01 KCC000088A_c01
TGGACTAACCCACTTGAGGAGCACCTCCTGCTCACTTATCAATTCTGCAATTCGCGCCAG
GAGCGCTTAGGTAGCTCAGACTTGATAGAATGCAGGTCCTCAAGAGCAAGACTCTGGTTA
GCGATGCTGCTGCGGCACCGCGCGCTGCTCAGCGTGCCACTGTGGCCCGACCGAGCGTTA
AGGTGCAAGCGGCACCCCGACTGCCCCCGGACACGCCTAAGGAGCGCGAGGGAGGCCGCG
AGTGGCTGGGCACTATCCTGTCTCGCTTTGGGCCGGTGAAGGACAAGGCGCAGAACACCA
CGACGCTTGAGTTTGAGAAGCCTCTGCTGGAGCTGGATAAGCGCATCAAGGAGGTGCGCA
AGGTCGCCGAGGAGAACGGCGTGGATGTGAGCGCCTCCATTGCTGAGCTGGAGGGCCGCG
CCAAGCAGCTGCGGAAGGAGACTTACAGCCGGCTGACGCCCGTCCAGCGTCTGCAAGTCG
CTCGCCACCCCAATCGCCCTACCTGCCTGGACATCATCCTGAACATCACCGATAAGTTCG
TGGAGCTGCACGGTGACCGCGCGGGTCTCGACGACCCCGCCATCGTGTGCGGTATCGGCA
GCATCAATGGCACGCCGTTCATGATGATCGGCCACCAGAAGGGCCGGAACACAAAGGAGA
ACATTCGCCGCAACTTCGGCATGCCCCAGCCCAACGGCTACCGCAAGGCGCTGCGCTTCA
TGCGCCACGCCGACAAGTTTGGTCTGCCCATCATCACCTTCGTGGACACGCCCGGAGCCT
ATGCCGGCAAGACCGCGGAGGAGCTGGGCCAGGGCGAGGCCATTGCCGTGAACCTGCGTG
AGATGTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000088A_C01 KCC000088A_c01
         (847 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T06765 acetyl-CoA carboxylase (EC 6.4.1.2), carboxyltransfe...   259  5e-68
gb|AAF89549.1|AF165159_1 carboxyl transferase alpha subunit [Gly...   258  9e-68
ref|NP_565880.1| alpha-carboxyltransferase -related [Arabidopsis...   258  1e-67
gb|AAF80496.1|AF164510_1 carboxyl transferase alpha subunit [Gly...   256  3e-67
gb|AAF89548.1|AF165158_1 carboxyl transferase alpha subunit [Gly...   255  6e-67

>pir||T06765 acetyl-CoA carboxylase (EC 6.4.1.2), carboxyltransferase alpha
           chain precursor - soybean gi|1143322|gb|AAB03847.1|
           alfa-carboxyltransferase precursor
           gi|8886532|gb|AAF80497.1|AF164511_1 carboxyl transferase
           alpha subunit [Glycine max]
          Length = 690

 Score =  259 bits (661), Expect = 5e-68
 Identities = 129/214 (60%), Positives = 163/214 (75%)
 Frame = +3

Query: 204 PPDTPKEREGGREWLGTILSRFGPVKDKAQNTTTLEFEKPLLELDKRIKEVRKVAEENGV 383
           PP+     +GG   + + LS F P+K+K +   TL+FEKPL++L K+I +V+K+A E G+
Sbjct: 61  PPNPDPNVKGG---VLSHLSMFKPLKEKPK-PVTLDFEKPLVDLQKKIIDVQKMANETGL 116

Query: 384 DVSASIAELEGRAKQLRKETYSRLTPVQRLQVARHPNRPTCLDIILNITDKFVELHGDRA 563
           D S  I  LE + +Q  K+ Y+ LTP+QR+ +ARHPNRPT LD + NIT+KFVELHGDRA
Sbjct: 117 DFSDQILSLETKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRA 176

Query: 564 GLDDPAIVCGIGSINGTPFMMIGHQKGRNTKENIRRNFGMPQPNGYRKALRFMRHADKFG 743
           G DDPAIV G+G+I+G  +M IGHQKGRNTKENI+RNFGMP P+GYRKALR M +AD  G
Sbjct: 177 GYDDPAIVTGLGTIDGRSYMFIGHQKGRNTKENIQRNFGMPTPHGYRKALRLMEYADHHG 236

Query: 744 LPIITFVDTPGAYAGKTAEELGQGEAIAVNLREM 845
            PI+TF+DTPGAYA   +EELGQGEAIA NLR M
Sbjct: 237 FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRSM 270

>gb|AAF89549.1|AF165159_1 carboxyl transferase alpha subunit [Glycine max]
          Length = 690

 Score =  258 bits (659), Expect = 9e-68
 Identities = 125/196 (63%), Positives = 155/196 (78%)
 Frame = +3

Query: 258 LSRFGPVKDKAQNTTTLEFEKPLLELDKRIKEVRKVAEENGVDVSASIAELEGRAKQLRK 437
           LS F P+K+K +   TL+FEKPL++L K+I +V+K+A E G+D S  I  LE + +Q  K
Sbjct: 76  LSLFKPLKEKPK-PVTLDFEKPLVDLQKKIIDVQKMANETGLDFSDQILSLENKYQQALK 134

Query: 438 ETYSRLTPVQRLQVARHPNRPTCLDIILNITDKFVELHGDRAGLDDPAIVCGIGSINGTP 617
           + Y+ LTP+QR+ +ARHPNRPT LD + NIT+KFVELHGDRAG DDPAIV G+G+I+G  
Sbjct: 135 DLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGLGTIDGRS 194

Query: 618 FMMIGHQKGRNTKENIRRNFGMPQPNGYRKALRFMRHADKFGLPIITFVDTPGAYAGKTA 797
           +M IGHQKGRNTKENI+RNFGMP P+GYRKALR M +AD  G PI+TF+DTPGAYA   +
Sbjct: 195 YMFIGHQKGRNTKENIQRNFGMPTPHGYRKALRLMEYADHHGFPIVTFIDTPGAYADLKS 254

Query: 798 EELGQGEAIAVNLREM 845
           EELGQGEAIA NLR M
Sbjct: 255 EELGQGEAIAHNLRSM 270

>ref|NP_565880.1| alpha-carboxyltransferase -related [Arabidopsis thaliana]
           gi|30687368|ref|NP_850291.1| alpha-carboxyltransferase
           -related [Arabidopsis thaliana]
           gi|6851091|gb|AAF29414.1|AF056969_1 carboxyltransferase
           alpha subunit [Arabidopsis thaliana]
           gi|6851093|gb|AAF29415.1|AF056970_1 carboxyltransferase
           alpha subunit [Arabidopsis thaliana]
          Length = 769

 Score =  258 bits (658), Expect = 1e-67
 Identities = 127/196 (64%), Positives = 153/196 (77%)
 Frame = +3

Query: 258 LSRFGPVKDKAQNTTTLEFEKPLLELDKRIKEVRKVAEENGVDVSASIAELEGRAKQLRK 437
           L+ F P+ D  Q   TL+FEKPL+EL+K+I +VRK+A E G+D +  I  LE + +Q  K
Sbjct: 83  LAEFKPLGD-TQKPVTLDFEKPLVELEKKIVDVRKMANETGLDFTEQIITLENKYRQALK 141

Query: 438 ETYSRLTPVQRLQVARHPNRPTCLDIILNITDKFVELHGDRAGLDDPAIVCGIGSINGTP 617
           + Y+ LTP+QR+ +ARHPNRPT LD I NITDKF+ELHGDRAG DDPAIV GIG+I+G  
Sbjct: 142 DLYTHLTPIQRVNIARHPNRPTFLDHIHNITDKFMELHGDRAGYDDPAIVTGIGTIDGKR 201

Query: 618 FMMIGHQKGRNTKENIRRNFGMPQPNGYRKALRFMRHADKFGLPIITFVDTPGAYAGKTA 797
           +M IGHQKGRNTKENI RNFGMP P+GYRKALR M +AD  G PI+TF+DTPGAYA   +
Sbjct: 202 YMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKS 261

Query: 798 EELGQGEAIAVNLREM 845
           EELGQGEAIA NLR M
Sbjct: 262 EELGQGEAIANNLRTM 277

>gb|AAF80496.1|AF164510_1 carboxyl transferase alpha subunit [Glycine max]
          Length = 709

 Score =  256 bits (655), Expect = 3e-67
 Identities = 128/214 (59%), Positives = 162/214 (74%)
 Frame = +3

Query: 204 PPDTPKEREGGREWLGTILSRFGPVKDKAQNTTTLEFEKPLLELDKRIKEVRKVAEENGV 383
           PP+     +GG   + + LS F P+K+K +   TL+FE+PL++L K+I +V+K+A E G+
Sbjct: 61  PPNPDPNVKGG---VLSHLSLFKPLKEKPK-PVTLDFERPLVDLQKKIIDVQKMANETGL 116

Query: 384 DVSASIAELEGRAKQLRKETYSRLTPVQRLQVARHPNRPTCLDIILNITDKFVELHGDRA 563
           D S  I  LE +  Q  K+ Y+ LTP+QR+ +ARHPNRPT LD + NIT+KFVELHGDRA
Sbjct: 117 DFSDQILSLETKYHQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRA 176

Query: 564 GLDDPAIVCGIGSINGTPFMMIGHQKGRNTKENIRRNFGMPQPNGYRKALRFMRHADKFG 743
           G DDPAIV G+G+I+G  +M IGHQKGRNTKENI+RNFGMP P+GYRKALR M +AD  G
Sbjct: 177 GYDDPAIVTGLGTIDGRSYMFIGHQKGRNTKENIQRNFGMPTPHGYRKALRLMEYADHHG 236

Query: 744 LPIITFVDTPGAYAGKTAEELGQGEAIAVNLREM 845
            PI+TF+DTPGAYA   +EELGQGEAIA NLR M
Sbjct: 237 FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRSM 270

>gb|AAF89548.1|AF165158_1 carboxyl transferase alpha subunit [Glycine max]
          Length = 690

 Score =  255 bits (652), Expect = 6e-67
 Identities = 124/196 (63%), Positives = 154/196 (78%)
 Frame = +3

Query: 258 LSRFGPVKDKAQNTTTLEFEKPLLELDKRIKEVRKVAEENGVDVSASIAELEGRAKQLRK 437
           LS F P+K + +   TL+FEKPL++L K+I +V+K+A E G+D S  I  LE + +Q  K
Sbjct: 76  LSLFKPLKGEPK-PVTLDFEKPLVDLQKKIIDVQKMANETGLDFSDQILSLENKYQQALK 134

Query: 438 ETYSRLTPVQRLQVARHPNRPTCLDIILNITDKFVELHGDRAGLDDPAIVCGIGSINGTP 617
           + Y+ LTP+QR+ +ARHPNRPT LD + NIT+KFVELHGDRAG DDPAIV G+G+I+G  
Sbjct: 135 DLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGLGTIDGRS 194

Query: 618 FMMIGHQKGRNTKENIRRNFGMPQPNGYRKALRFMRHADKFGLPIITFVDTPGAYAGKTA 797
           +M IGHQKGRNTKENI+RNFGMP P+GYRKALR M +AD  G PI+TF+DTPGAYA   +
Sbjct: 195 YMFIGHQKGRNTKENIQRNFGMPTPHGYRKALRLMEYADHHGFPIVTFIDTPGAYADLKS 254

Query: 798 EELGQGEAIAVNLREM 845
           EELGQGEAIA NLR M
Sbjct: 255 EELGQGEAIAHNLRSM 270



EST assemble image


clone accession position
1 HCL089f03_r AV644500 1 214
2 LCL038e09_r AV628213 76 201
3 LCL014g07_r AV626746 80 385
4 LCL033e07_r AV627896 80 556
5 LCL097e01_r AV631643 80 431
6 MXL054f04_r BP096208 87 401
7 MX225h05_r BP090577 102 406
8 CL04c01_r AV393380 159 634
9 HCL062f01_r AV643033 186 714
10 LCL002g02_r AV626122 349 878
11 LCL086e04_r AV630932 533 940




Chlamydomonas reinhardtii
Kazusa DNA Research Institute