KCC000075A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000075A_C01 KCC000075A_c01
cacgaacaatccctggctaGGAAACCACACCAGTCGCAAACTCCGGGGCAACTCTGGGGG
CAACTTCTGGACCCGCACACAGAAATTGTGGGGTGTCCTCCTGAGGGCAGGGCTCGACGA
GCAAATACATTTTAGCTACTCCTACTGACTTCACATTTAACAGCTGATATCTACGGGCAC
TGCGAGGGCTCGCTGCCCAAGCGTGCGAGTTCCCGTATTAGAGCCTTTAGCCATACTTTT
TATAGTGATATAAGCAAAAGGACTGCAACCAGCGGGCAAGCCTCCATGGCTCCCTATCTG
GGGGCGGGGCCCCTCGCCTGGCAGGCCTGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000075A_C01 KCC000075A_c01
         (331 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_924160.1| hypothetical protein gll1214 [Gloeobacter viola...    32  1.8
gb|AAH58740.1| Dapper 2 [Mus musculus]                                 31  4.0
ref|NP_766414.2| dapper 2 [Mus musculus] gi|31544932|gb|AAP57185...    31  4.0
gb|AAH52569.1| Unknown (protein for MGC:59969) [Homo sapiens]          31  5.2
pir||A40701 tenascin-X precursor - human                               31  5.2

>ref|NP_924160.1| hypothetical protein gll1214 [Gloeobacter violaceus]
           gi|35211778|dbj|BAC89155.1| gll1214 [Gloeobacter
           violaceus]
          Length = 365

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 175 RRYQLLNVKSVGVAKMYLLVEPCPQEDTPQFLCAGPE-VAPRVAPEFATG 29
           + Y LL V+ + V  +YLL   CP   T Q L   PE    R A  +A G
Sbjct: 305 QEYSLLKVEHIDVEPVYLLQTSCPGTGTVQVLRVPPEFTTARTAARWANG 354

>gb|AAH58740.1| Dapper 2 [Mus musculus]
          Length = 757

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -3

Query: 170 ISAVKCEVSRSS*NVFARRALPSGGHPTISVCGSRSCPQSCPGVC 36
           IS ++ +VSRSS       + PS G   +S  GS S   SC  VC
Sbjct: 93  ISELQLDVSRSSCEALDSDSRPSSGFYELSDAGSCSLSTSCASVC 137

>ref|NP_766414.2| dapper 2 [Mus musculus] gi|31544932|gb|AAP57185.1| dapper2 [Mus
           musculus]
          Length = 757

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -3

Query: 170 ISAVKCEVSRSS*NVFARRALPSGGHPTISVCGSRSCPQSCPGVC 36
           IS ++ +VSRSS       + PS G   +S  GS S   SC  VC
Sbjct: 93  ISELQLDVSRSSCEALDSDSRPSSGFYELSDAGSCSLSTSCASVC 137

>gb|AAH52569.1| Unknown (protein for MGC:59969) [Homo sapiens]
          Length = 344

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 16/38 (42%), Positives = 19/38 (49%)
 Frame = -3

Query: 116 RALPSGGHPTISVCGSRSCPQSCPGVCDWCGFLARDCS 3
           RA P+GG P     G R  P  CP +CD  G  +  CS
Sbjct: 275 RAAPAGGAP-----GPRPHPLPCPSLCDTAGRRSCGCS 307

>pir||A40701 tenascin-X precursor - human
          Length = 3566

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
 Frame = -3

Query: 77  CGSRSCPQSCP--GVCD------WCGFLARDCS 3
           CG R CP  C   GVC       W G+++ DCS
Sbjct: 585 CGVRQCPNDCSQHGVCQDGVCICWEGYVSEDCS 617



EST assemble image


clone accession position
1 LCL076a04_r AV630243 1 331
2 CL03f11_r AV393409 20 326




Chlamydomonas reinhardtii
Kazusa DNA Research Institute