KCC000060A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000060A_C01 KCC000060A_c01
AAGATGGGCGCCTACAAGTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTC
CGCTTCCTGCTGCGTGTGCGCTGCTGGGAGTACCGCCAGATGCCCAGCTGCGTGCGCCTG
ACTCGCCCGTCGCGCCCGGACAAGGCCCGCCGCCTGGGCTACAAGGCCAAGCAGGGCTAC
GTTGTCTACCGCGTGCGCGTCCGCCGCGGCAACCGCAAGCGGCCTGTGCACAAGGGCATT
GTCTACGGCAAGCCCGTGAACCAGGGTATCACCCAGCTGAAGCCCGCCCGCAACCTGCGC
AACGTCGCTGAGGAGCGTGCTGGCCGCAAGTGCGGTGGCCTGCGCGTCCTGAACTCCTAC
TGGGTGAACCAGGACTCGTGCTACAAGTACTTCGAGGTGATCATGGTGGACCCCGCCCAC
AACGCCATCCGCAACGATGCCCGCATCAACTGGCTGTGCAACCCCGTGCACAAGCACCGC
GAGCTGCGCGGTCTGACCGCCGCGGGCAAGAACTACCGCGGCCTGCGCGCCAAGGGCCAC
AAGGCCAGCAAGACCCGCCCCTCGAAGAGGGCCAGCTGGAAGCGCCGCAACAGCCTGTCG
CTGCGCCGCTTCCGCTAAACAGCATCTGCCTCATCATCAGCTGCTGTTGGCGCCGCCTGA
TTGCGAGATTACACCATCAACTCTTACGATCGTCATTCTATTCTCTGTAACGAGGAGGGC
TTCCAGCCCTACACGCCCTCTACAACCTCCACTCACCACTACACACATCACTTCCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000060A_C01 KCC000060A_c01
         (776 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O65050|R15A_PICMA 60S RIBOSOMAL PROTEIN L15-1 gi|2982249|gb|A...   350  1e-95
sp|O65082|R15B_PICMA 60S RIBOSOMAL PROTEIN L15-2 gi|2982318|gb|A...   350  2e-95
ref|NP_193405.1| 60S ribosomal protein L15 (RPL15A) [Arabidopsis...   348  4e-95
ref|NP_193470.1| 60S ribosomal protein L15 (RPL15B) [Arabidopsis...   348  7e-95
gb|AAN08216.1| ribosomal protein L15 [Oryza sativa (japonica cul...   347  2e-94

>sp|O65050|R15A_PICMA 60S RIBOSOMAL PROTEIN L15-1 gi|2982249|gb|AAC32112.1| probable 60S
           ribosomal protein L15 [Picea mariana]
          Length = 204

 Score =  350 bits (899), Expect = 1e-95
 Identities = 165/204 (80%), Positives = 183/204 (88%)
 Frame = +1

Query: 4   MGAYKYIEELWRKKQSDVLRFLLRVRCWEYRQMPSCVRLTRPSRPDKARRLGYKAKQGYV 183
           MGAYKYIEELW+KKQSDV+RFL RVRCWE+RQ+P  VR+TRPSRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYV 60

Query: 184 VYRVRVRRGNRKRPVHKGIVYGKPVNQGITQLKPARNLRNVAEERAGRKCGGLRVLNSYW 363
           VYRVRVRRG RKRPV KGIVYGKP NQGITQLK  R+LR+VAEERAGRK GGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYW 120

Query: 364 VNQDSCYKYFEVIMVDPAHNAIRNDARINWLCNPVHKHRELRGLTAAGKNYRGLRAKGHK 543
           +NQDS YKY+E+I+VD AH+AIR D RINW+CN VHKHRELRGLT+AGK YRGLR +GH 
Sbjct: 121 INQDSTYKYYEIILVDQAHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 544 ASKTRPSKRASWKRRNSLSLRRFR 615
             K RPSKRA+WKR N+LSLRR+R
Sbjct: 181 YHKARPSKRATWKRNNTLSLRRYR 204

>sp|O65082|R15B_PICMA 60S RIBOSOMAL PROTEIN L15-2 gi|2982318|gb|AAC32144.1| probable 60S
           ribosomal protein L15 [Picea mariana]
          Length = 204

 Score =  350 bits (897), Expect = 2e-95
 Identities = 164/204 (80%), Positives = 181/204 (88%)
 Frame = +1

Query: 4   MGAYKYIEELWRKKQSDVLRFLLRVRCWEYRQMPSCVRLTRPSRPDKARRLGYKAKQGYV 183
           MGAYKYIEELW+KKQSDV+RFL RVRCWEYRQ+P  VR+T P+RPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYV 60

Query: 184 VYRVRVRRGNRKRPVHKGIVYGKPVNQGITQLKPARNLRNVAEERAGRKCGGLRVLNSYW 363
           VYRVRVRRG RKRPV KGIVYGKP NQGITQLK  R+LR+VAEERAGRK GGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYW 120

Query: 364 VNQDSCYKYFEVIMVDPAHNAIRNDARINWLCNPVHKHRELRGLTAAGKNYRGLRAKGHK 543
           +NQDS YKY+EV++VD AH  IRND RINW+CN VHKHRELRGLT+AGK YRGLR +GH 
Sbjct: 121 INQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 544 ASKTRPSKRASWKRRNSLSLRRFR 615
             K RPSKRA+WKR N+LSLRR+R
Sbjct: 181 YHKARPSKRATWKRNNTLSLRRYR 204

>ref|NP_193405.1| 60S ribosomal protein L15 (RPL15A) [Arabidopsis thaliana]
           gi|3122673|sp|O23515|RL15_ARATH 60S ribosomal protein
           L15 gi|7441105|pir||E71434 ribosomal protein
           L15.DL4385C, cytosolic - Arabidopsis thaliana
           gi|2245027|emb|CAB10447.1| ribosomal protein
           [Arabidopsis thaliana] gi|7268422|emb|CAB78714.1|
           ribosomal protein [Arabidopsis thaliana]
           gi|13878179|gb|AAK44167.1|AF370352_1 putative ribosomal
           protein [Arabidopsis thaliana]
           gi|16604446|gb|AAL24229.1| AT4g16720/dl4385c
           [Arabidopsis thaliana] gi|19715591|gb|AAL91619.1|
           AT4g16720/dl4385c [Arabidopsis thaliana]
           gi|21592436|gb|AAM64387.1| ribosomal protein
           [Arabidopsis thaliana] gi|22136774|gb|AAM91731.1|
           putative ribosomal protein [Arabidopsis thaliana]
           gi|23505795|gb|AAN28757.1| At4g16720/dl4385c
           [Arabidopsis thaliana]
          Length = 204

 Score =  348 bits (894), Expect = 4e-95
 Identities = 161/204 (78%), Positives = 181/204 (87%)
 Frame = +1

Query: 4   MGAYKYIEELWRKKQSDVLRFLLRVRCWEYRQMPSCVRLTRPSRPDKARRLGYKAKQGYV 183
           MGAYKY+ ELWRKKQSDV+RFL RVRCWEYRQ PS VRL RP+RPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 184 VYRVRVRRGNRKRPVHKGIVYGKPVNQGITQLKPARNLRNVAEERAGRKCGGLRVLNSYW 363
           VYRVRVRRG RKRPV KGIVYGKP NQG+TQLK  R+ R+VAEERAGRK GGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 364 VNQDSCYKYFEVIMVDPAHNAIRNDARINWLCNPVHKHRELRGLTAAGKNYRGLRAKGHK 543
           +N+DS YKY+E+I+VDPAHNA+RND RINW+CNPVHKHRELRGLT+ GK  RGLR KGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 544 ASKTRPSKRASWKRRNSLSLRRFR 615
             K RPS+RA+WK+ NSLSLRR+R
Sbjct: 181 NHKNRPSRRATWKKNNSLSLRRYR 204

>ref|NP_193470.1| 60S ribosomal protein L15 (RPL15B) [Arabidopsis thaliana]
           gi|18175858|gb|AAL59940.1| putative 60S ribosomal
           protein L15-like protein [Arabidopsis thaliana]
           gi|21592700|gb|AAM64649.1| 60S ribosomal protein L15
           homolog [Arabidopsis thaliana]
           gi|21689875|gb|AAM67498.1| putative 60S ribosomal
           protein L15-like protein [Arabidopsis thaliana]
          Length = 204

 Score =  348 bits (892), Expect = 7e-95
 Identities = 160/204 (78%), Positives = 181/204 (88%)
 Frame = +1

Query: 4   MGAYKYIEELWRKKQSDVLRFLLRVRCWEYRQMPSCVRLTRPSRPDKARRLGYKAKQGYV 183
           MGAYKY+ ELWRKKQSDV+RFL RVRCWEYRQ PS VRL RP+RPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 184 VYRVRVRRGNRKRPVHKGIVYGKPVNQGITQLKPARNLRNVAEERAGRKCGGLRVLNSYW 363
           VYRVRVRRG RKRPV KGIVYGKP NQG+TQLK  R+ R+VAEERAGRK GGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 364 VNQDSCYKYFEVIMVDPAHNAIRNDARINWLCNPVHKHRELRGLTAAGKNYRGLRAKGHK 543
           +N+DS YKY+E+I+VDPAHNA+RND RINW+CNPVHKHRELRGLT+ GK  RGLR KGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 544 ASKTRPSKRASWKRRNSLSLRRFR 615
             K RPS+RA+WK+ NS+SLRR+R
Sbjct: 181 NHKNRPSRRATWKKNNSISLRRYR 204

>gb|AAN08216.1| ribosomal protein L15 [Oryza sativa (japonica cultivar-group)]
           gi|28875969|gb|AAO59978.1| ribosomal protein L15 [Oryza
           sativa (japonica cultivar-group)]
          Length = 204

 Score =  347 bits (889), Expect = 2e-94
 Identities = 163/204 (79%), Positives = 181/204 (87%)
 Frame = +1

Query: 4   MGAYKYIEELWRKKQSDVLRFLLRVRCWEYRQMPSCVRLTRPSRPDKARRLGYKAKQGYV 183
           MGAYKY+ ELWR+KQSDV+RF+ RVRCWEYRQ P+ VRLTRP+RPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 184 VYRVRVRRGNRKRPVHKGIVYGKPVNQGITQLKPARNLRNVAEERAGRKCGGLRVLNSYW 363
           VYRVRVRRG RKRPV KGIVYGKP +QGITQLK  RN R+VAEERAGRK GGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 364 VNQDSCYKYFEVIMVDPAHNAIRNDARINWLCNPVHKHRELRGLTAAGKNYRGLRAKGHK 543
           VN+DS YKYFE+I+VD AH+AIRND RINWLC PVHKHRELRGLT+AGK YRGLR KGH 
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180

Query: 544 ASKTRPSKRASWKRRNSLSLRRFR 615
             K RPS+RA+WKR  ++SLRR+R
Sbjct: 181 HHKARPSRRATWKRNQTVSLRRYR 204



EST assemble image


clone accession position
1 LC029c02_r AV620958 1 604
2 HC070e07_r AV637238 16 556
3 HC085e07_r AV638371 37 506
4 CS001b10_r AV398022 97 645
5 HC049f09_r AV635697 104 603
6 MXL088g02_r BP098173 104 511
7 HCL065d03_r AV643194 105 628
8 MX037a08_r BP087544 105 604
9 CS001a03_r AV397952 106 511
10 MXL056a03_r BP096287 106 502
11 MXL008d09_r BP093439 106 499
12 CS001b11_r AV397992 107 661
13 MX037a05_r BP087543 107 540
14 MXL080h09_r BP097760 109 477
15 HCL040d08_r AV641796 111 616
16 MX057c09_r BP088319 113 456
17 MX050b04_r BP088046 113 443
18 MXL035h02_r BP095100 113 603
19 MX008d09_r BP086417 114 489
20 MXL063h06_r BP096731 115 513
21 MXL068h08_r BP097030 116 536
22 CM024b12_r AV388237 117 692
23 MXL076a11_r BP097459 117 485
24 MX013c10_r BP086633 117 514
25 HC085g07_r AV638389 117 618
26 HC026d11_r AV633881 117 604
27 CM060c10_r AV390751 121 733
28 CL37a12_r AV395231 121 604
29 HC089f01_r AV638699 124 628
30 HCL032e10_r AV641377 124 498
31 MXL014c09_r BP093820 124 618
32 CM080c08_r AV392070 127 640
33 HC091a04_r AV638802 127 535
34 HC056g01_r AV636225 130 541
35 CL02g05_r AV397598 131 693
36 HC075d05_r AV637614 137 628
37 MX245f05_r BP091880 149 607
38 CM023e02_r AV387790 305 884
39 HCL092b11_r AV644685 335 787
40 CL47b07_r AV395706 360 830
41 LCL098f03_r AV631714 562 882
42 LCL092c12_r AV631343 685 867




Chlamydomonas reinhardtii
Kazusa DNA Research Institute