Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000028A_C01 KCC000028A_c01
(635 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P42756|RS11_DUNTE 40S RIBOSOMAL PROTEIN S11 gi|7440474|pir||T... 270 2e-71
ref|NP_190462.1| 40S ribosomal protein S11 (RPS11A) [Arabidopsis... 224 6e-58
sp|P25460|RS11_MAIZE 40S RIBOSOMAL PROTEIN S11 gi|82722|pir||S16... 224 6e-58
sp|P17093|RS11_SOYBN 40S RIBOSOMAL PROTEIN S11 gi|454848|gb|AAC1... 224 6e-58
gb|AAA32866.1| ribosomal protein S11 (probable start codon at bp... 224 6e-58
>sp|P42756|RS11_DUNTE 40S RIBOSOMAL PROTEIN S11 gi|7440474|pir||T10730 ribosomal protein
S11 - green alga (Dunaliella tertiolecta)
gi|534959|emb|CAA46835.1| ribosomal protein S11
[Dunaliella tertiolecta]
Length = 157
Score = 270 bits (689), Expect = 2e-71
Identities = 126/157 (80%), Positives = 143/157 (90%), Gaps = 1/157 (0%)
Frame = +3
Query: 6 MADQTERAFQKQFGVTGCFKSKEKKAPGKSGHRFYKQIGLGFKTPKEAIEGHYIDKKCPF 185
MA+QTE+AFQKQ GVTGCFKSKEKKAPGKSGHRF+K +GL FKTPKEAI+G+Y+DKKCPF
Sbjct: 1 MAEQTEKAFQKQVGVTGCFKSKEKKAPGKSGHRFFKNVGLNFKTPKEAIDGNYVDKKCPF 60
Query: 186 TGNVSIRGRILTGYVKSTKMNRTIIVRRDYLHFVKKYGRYEKRHRNISAHISPCFRVREG 365
TGNVSIRGRILTG VKS+KM RTIIVRRDYLHF+ KY RYEKRH NI AH+SPCFRVR+G
Sbjct: 61 TGNVSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARYEKRHTNIPAHVSPCFRVRDG 120
Query: 366 DSVVIGQCRPLSKTVRFNVLRVTP-SGSSAKKGFSSF 473
D+V+IGQCRPLSKT+RFNVLRV P +G++ KK FS F
Sbjct: 121 DTVIIGQCRPLSKTIRFNVLRVIPQAGATGKKSFSGF 157
>ref|NP_190462.1| 40S ribosomal protein S11 (RPS11A) [Arabidopsis thaliana]
gi|133866|sp|P16181|R11A_ARATH 40S ribosomal protein
S11-1 gi|81659|pir||C35542 ribosomal protein S11 -
Arabidopsis thaliana gi|454808|gb|AAC14454.1| ribosomal
protein S11 [Arabidopsis thaliana]
gi|6522573|emb|CAB62017.1| cytosolic ribosomal protein
S11 [Arabidopsis thaliana] gi|16649155|gb|AAL24429.1|
cytosolic ribosomal protein S11 [Arabidopsis thaliana]
gi|20148571|gb|AAM10176.1| cytosolic ribosomal protein
S11 [Arabidopsis thaliana] gi|21593611|gb|AAM65578.1|
cytosolic ribosomal protein S11 [Arabidopsis thaliana]
Length = 160
Score = 224 bits (572), Expect = 6e-58
Identities = 111/157 (70%), Positives = 127/157 (80%), Gaps = 1/157 (0%)
Frame = +3
Query: 6 MADQTERAFQKQFGV-TGCFKSKEKKAPGKSGHRFYKQIGLGFKTPKEAIEGHYIDKKCP 182
MA+QTE+AF KQ V KS + K PGK G+RF+K IGLGFKTP+EAI+G Y+DKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60
Query: 183 FTGNVSIRGRILTGYVKSTKMNRTIIVRRDYLHFVKKYGRYEKRHRNISAHISPCFRVRE 362
FTG VSIRGRIL G S KM RTIIVRRDYLHFVKKY RYEKRH NI AH+SPCFRV+E
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120
Query: 363 GDSVVIGQCRPLSKTVRFNVLRVTPSGSSAKKGFSSF 473
GD ++IGQCRPLSKTVRFNVL+V P+GSS+ G +F
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAF 157
>sp|P25460|RS11_MAIZE 40S RIBOSOMAL PROTEIN S11 gi|82722|pir||S16577 ribosomal protein
S11 - maize gi|22470|emb|CAA39438.1| ribosomal protein
S11 [Zea mays]
Length = 159
Score = 224 bits (572), Expect = 6e-58
Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 3/158 (1%)
Frame = +3
Query: 6 MADQTERAFQKQFGV-TGCFKSKEKKAPGKSGHRFYKQIGLGFKTPKEAIEGHYIDKKCP 182
MA+QTE+AF KQ V KS + K PGK G+RF+K IGLGFKTP+EAIEG YIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 183 FTGNVSIRGRILTGYVKSTKMNRTIIVRRDYLHFVKKYGRYEKRHRNISAHISPCFRVRE 362
FTG VSIRGRI+ G S KMNRTIIVRR+YLHFVKKY RYEKRH NI AHISPCFRV+E
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
Query: 363 GDSVVIGQCRPLSKTVRFNVLRVTPSGSSA--KKGFSS 470
GD V+IGQCRPLSKTVRFNV++V P+GS+A KK F++
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158
>sp|P17093|RS11_SOYBN 40S RIBOSOMAL PROTEIN S11 gi|454848|gb|AAC14469.1| ribosomal
protein S11 [Glycine max]
Length = 159
Score = 224 bits (572), Expect = 6e-58
Identities = 116/157 (73%), Positives = 128/157 (80%), Gaps = 3/157 (1%)
Frame = +3
Query: 6 MADQTERAFQKQFGVTGCFKSKEK-KAPGKSGHRFYKQIGLGFKTPKEAIEGHYIDKKCP 182
MA+QTE+AF KQ V K K K PGK G+RF+K IGLGFKTP+EAIEG YIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 183 FTGNVSIRGRILTGYVKSTKMNRTIIVRRDYLHFVKKYGRYEKRHRNISAHISPCFRVRE 362
FTGNVSIRGRIL G S KMNRTIIVRR+YLHF+KKY RYEKRH NI AHISP FRV+E
Sbjct: 61 FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120
Query: 363 GDSVVIGQCRPLSKTVRFNVLRVTPSGSS--AKKGFS 467
GD V+IGQCRPLSKTVRFNVL+V P+GSS AKK F+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFT 157
>gb|AAA32866.1| ribosomal protein S11 (probable start codon at bp 67)
Length = 182
Score = 224 bits (572), Expect = 6e-58
Identities = 111/157 (70%), Positives = 127/157 (80%), Gaps = 1/157 (0%)
Frame = +3
Query: 6 MADQTERAFQKQFGV-TGCFKSKEKKAPGKSGHRFYKQIGLGFKTPKEAIEGHYIDKKCP 182
MA+QTE+AF KQ V KS + K PGK G+RF+K IGLGFKTP+EAI+G Y+DKKCP
Sbjct: 23 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 82
Query: 183 FTGNVSIRGRILTGYVKSTKMNRTIIVRRDYLHFVKKYGRYEKRHRNISAHISPCFRVRE 362
FTG VSIRGRIL G S KM RTIIVRRDYLHFVKKY RYEKRH NI AH+SPCFRV+E
Sbjct: 83 FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 142
Query: 363 GDSVVIGQCRPLSKTVRFNVLRVTPSGSSAKKGFSSF 473
GD ++IGQCRPLSKTVRFNVL+V P+GSS+ G +F
Sbjct: 143 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAF 179