Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000024A_C01 KCC000024A_c01
(716 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179563.1| 60S ribosomal protein L28 (RPL28A) [Arabidopsis... 89 7e-17
dbj|BAB86520.1| ribosomal protein L28-like [Oryza sativa (japoni... 86 4e-16
ref|NP_194670.1| 60S ribosomal protein L28 (RPL28C) [Arabidopsis... 84 2e-15
ref|XP_326065.1| predicted protein [Neurospora crassa] gi|289245... 78 1e-13
sp|Q9GS21|RL28_DICDI 60S ribosomal protein L28 gi|11245768|gb|AA... 75 1e-12
>ref|NP_179563.1| 60S ribosomal protein L28 (RPL28A) [Arabidopsis thaliana]
gi|25295483|pir||D84580 probable ribosomal protein L28
[imported] - Arabidopsis thaliana
gi|3687251|gb|AAC62149.1| putative ribosomal protein L28
[Arabidopsis thaliana] gi|15292671|gb|AAK92704.1|
putative ribosomal protein L28 [Arabidopsis thaliana]
gi|19310757|gb|AAL85109.1| putative ribosomal protein
L28 [Arabidopsis thaliana]
Length = 143
Score = 89.0 bits (219), Expect = 7e-17
Identities = 59/135 (43%), Positives = 79/135 (57%), Gaps = 8/135 (5%)
Frame = +3
Query: 162 QLVWECIKGHNSKLRKA-AKG---IVFSAEAGNLYNKHSYKYSGLVNAKTVDV-AAD-GE 323
QL+WE +K +N L K +G + FS E NL N HSYK+SGL N KTV + AAD +
Sbjct: 7 QLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQ 66
Query: 324 AVKLTVGRVKNASKPSVSKFSMTMKKHSRGVCAAVGKQV--SSYRPDLKAAAQARAAAVH 497
AV L + K +KP +S +KK + AV QV + YRPDLK AA AR +A+
Sbjct: 67 AVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAIS 126
Query: 498 KSIRVARANKK*MDR 542
K +RVA++ K +R
Sbjct: 127 KGLRVAKSGAKQRNR 141
>dbj|BAB86520.1| ribosomal protein L28-like [Oryza sativa (japonica cultivar-group)]
gi|20804640|dbj|BAB92329.1| ribosomal protein L28-like
[Oryza sativa (japonica cultivar-group)]
Length = 145
Score = 86.3 bits (212), Expect = 4e-16
Identities = 58/135 (42%), Positives = 78/135 (56%), Gaps = 9/135 (6%)
Frame = +3
Query: 165 LVWECIKGHNSKLRKAAKG----IVFSAEAGNLYNKHSYKYSGLVNAKTVDV-AADGE-- 323
LVWE +K +NS L K + FS E NLYN HSYK+SGL N KTV V A G+
Sbjct: 8 LVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTVTVQPASGKET 67
Query: 324 AVKLTVGRVKNASKPSVSKFSMTMKKHSRGVCAAVGKQVSS--YRPDLKAAAQARAAAVH 497
AV L+ + + +KP+ M+K R + AV QVS YRPDL A AR +AV+
Sbjct: 68 AVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVY 127
Query: 498 KSIRVARANKK*MDR 542
+S++VA++ K +R
Sbjct: 128 RSLQVAKSGVKKKNR 142
>ref|NP_194670.1| 60S ribosomal protein L28 (RPL28C) [Arabidopsis thaliana]
gi|25295482|pir||B85343 hypothetical protein AT4g29410
[imported] - Arabidopsis thaliana
gi|7269839|emb|CAB79699.1| putative protein [Arabidopsis
thaliana] gi|18252205|gb|AAL61935.1| putative protein
[Arabidopsis thaliana] gi|21593876|gb|AAM65843.1|
putative ribosomal protein L28 [Arabidopsis thaliana]
gi|23197678|gb|AAN15366.1| putative protein [Arabidopsis
thaliana]
Length = 143
Score = 84.3 bits (207), Expect = 2e-15
Identities = 55/135 (40%), Positives = 77/135 (56%), Gaps = 8/135 (5%)
Frame = +3
Query: 162 QLVWECIKGHNSKLRKA-AKG---IVFSAEAGNLYNKHSYKYSGLVNAKTVDVAADG--E 323
QL+WE +K +N L K +G + FS E+ NL N +SYK+SGL N KTV + A G +
Sbjct: 7 QLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQ 66
Query: 324 AVKLTVGRVKNASKPSVSKFSMTMKKHSRGVCAAVGKQV--SSYRPDLKAAAQARAAAVH 497
V L + K +KP +S +KK + V QV + YRPDLK AA AR +A+
Sbjct: 67 GVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAIS 126
Query: 498 KSIRVARANKK*MDR 542
K +RVA++ K +R
Sbjct: 127 KGLRVAKSGPKRRNR 141
>ref|XP_326065.1| predicted protein [Neurospora crassa] gi|28924570|gb|EAA33690.1|
predicted protein [Neurospora crassa]
Length = 150
Score = 78.2 bits (191), Expect = 1e-13
Identities = 49/131 (37%), Positives = 71/131 (53%), Gaps = 4/131 (3%)
Frame = +3
Query: 138 VSQQKCRAQLVWECIKGHNSKL--RKAAKGIVFSAEAGNLYNKHSYKYSGLVNAKTVDVA 311
+S A L+WE + HNS L RK+ G+ FS + NL NKHS KY+G VN K V V
Sbjct: 1 MSLSNVSADLIWEITRSHNSFLVKRKSGGGVQFSRDPLNLTNKHSRKYAGFVNDKAVGVV 60
Query: 312 -ADGEAVKLTVGRVKNASKPSVS-KFSMTMKKHSRGVCAAVGKQVSSYRPDLKAAAQARA 485
+ V +T + + +KP+ + K +R A+ +QV+ YR DL AA ARA
Sbjct: 61 PGEKGGVVVTTKKAGSINKPAARYTVAFGANKTARKTYKAIARQVAGYRSDLLKAAVARA 120
Query: 486 AAVHKSIRVAR 518
+A+ +S R +
Sbjct: 121 SAIRRSQRAVK 131
>sp|Q9GS21|RL28_DICDI 60S ribosomal protein L28 gi|11245768|gb|AAG32533.1| ribosomal
protein L28 [Dictyostelium discoideum]
Length = 132
Score = 75.1 bits (183), Expect = 1e-12
Identities = 48/119 (40%), Positives = 68/119 (56%), Gaps = 1/119 (0%)
Frame = +3
Query: 165 LVWECIKGHNSKLRKAAKGIVFSAEAGNLYNKHSYKYSGLVNAKTVDVAADGEAVKLTVG 344
LVW IK +N+ L K++ G+ SAE GNL NK+S KYSGL T+DVAA V ++
Sbjct: 5 LVWSIIKKNNAFL-KSSHGLTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGKVVVSSK 63
Query: 345 RVKNASKPSVSKFSMTMKK-HSRGVCAAVGKQVSSYRPDLKAAAQARAAAVHKSIRVAR 518
VK A+ P+ SK + T ++R V + Y P+L+AAA R V ++R A+
Sbjct: 64 IVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLATQYAPELRAAALGRLHRVQSALRSAK 122
