Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000009A_C01 KCC000009A_c01
(567 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM28852.1|AF503586_1 ribosomal protein S20 [Branchiostoma be... 184 9e-46
emb|CAC44156.1| putative 40S ribosomal protein 20S protein [Onco... 182 2e-45
ref|NP_190321.1| 40S ribosomal protein S20 (RPS20B) [Arabidopsis... 182 2e-45
gb|AAM94275.1| ribosomal protein S20 [Chlamys farreri] 182 3e-45
ref|NP_201036.1| 40S ribosomal protein S20 (RPS20C) [Arabidopsis... 181 8e-45
>gb|AAM28852.1|AF503586_1 ribosomal protein S20 [Branchiostoma belcheri tsingtaunese]
Length = 121
Score = 184 bits (466), Expect = 9e-46
Identities = 89/120 (74%), Positives = 105/120 (87%)
Frame = +1
Query: 55 MATKAGVEKAGVEAEAPQVHRIRITLTSKNVKNLEKVCADLIKGAKEKQLKVKGPVRMPT 234
MA + G + E Q+HRIRITLTS+NVK+LEKVCADLI+GAKEK L+VKGPVRMPT
Sbjct: 1 MAYQKGADSGKAPMEETQIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLQVKGPVRMPT 60
Query: 235 KVLRITTRKAPSGQGTNTFDRFEMRIHKRLIDLHSPADVVKQITSISIEPGVEVEVTIAD 414
K+LRITTRK P G+G+ T+DR++MRIHKRLIDLHSP+++VKQITSISIEPGVEVEVTIAD
Sbjct: 61 KILRITTRKTPCGEGSKTWDRYQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 120
>emb|CAC44156.1| putative 40S ribosomal protein 20S protein [Oncorhynchus mykiss]
Length = 119
Score = 182 bits (463), Expect = 2e-45
Identities = 92/112 (82%), Positives = 103/112 (91%)
Frame = +1
Query: 79 KAGVEAEAPQVHRIRITLTSKNVKNLEKVCADLIKGAKEKQLKVKGPVRMPTKVLRITTR 258
KA VEAE +HRIRITLTS+NVK+LEKVCADLI+GAKEK LKVKGPVRMPTK LRITTR
Sbjct: 8 KAPVEAEVA-IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTR 66
Query: 259 KAPSGQGTNTFDRFEMRIHKRLIDLHSPADVVKQITSISIEPGVEVEVTIAD 414
K P G+G+ T+DRF+MRIHKRLIDLHSP+++VKQITSISIEPGVEVEVTIAD
Sbjct: 67 KTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118
>ref|NP_190321.1| 40S ribosomal protein S20 (RPS20B) [Arabidopsis thaliana]
gi|30692858|ref|NP_850665.1| 40S ribosomal protein S20
(RPS20B) [Arabidopsis thaliana] gi|7440305|pir||T12992
ribosomal protein S20, cytosolic - Arabidopsis thaliana
gi|5541704|emb|CAB51209.1| 40S RIBOSOMAL PROTEIN S20
homolog [Arabidopsis thaliana]
gi|21617905|gb|AAM66955.1| 40S ribosomal protein
S20-like protein [Arabidopsis thaliana]
gi|27765022|gb|AAO23632.1| At3g47370 [Arabidopsis
thaliana]
Length = 122
Score = 182 bits (463), Expect = 2e-45
Identities = 88/112 (78%), Positives = 104/112 (92%)
Frame = +1
Query: 79 KAGVEAEAPQVHRIRITLTSKNVKNLEKVCADLIKGAKEKQLKVKGPVRMPTKVLRITTR 258
KAG+EA Q+H+IRITL+SKNVKNLEKVC DL++GAK+K+L+VKGPVRMPTKVL+ITTR
Sbjct: 10 KAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTR 69
Query: 259 KAPSGQGTNTFDRFEMRIHKRLIDLHSPADVVKQITSISIEPGVEVEVTIAD 414
KAP G+GTNT+DRFE+R+HKR+IDL S DVVKQITSI+IEPGVEVEVTIAD
Sbjct: 70 KAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 121
>gb|AAM94275.1| ribosomal protein S20 [Chlamys farreri]
Length = 117
Score = 182 bits (462), Expect = 3e-45
Identities = 89/107 (83%), Positives = 101/107 (94%)
Frame = +1
Query: 94 AEAPQVHRIRITLTSKNVKNLEKVCADLIKGAKEKQLKVKGPVRMPTKVLRITTRKAPSG 273
AE +HRIRITLTS+NVK+LEKVCADLIKGAK+KQLKVKGPVRMPTKVLRITTRK P G
Sbjct: 10 AEEAPIHRIRITLTSRNVKSLEKVCADLIKGAKDKQLKVKGPVRMPTKVLRITTRKTPCG 69
Query: 274 QGTNTFDRFEMRIHKRLIDLHSPADVVKQITSISIEPGVEVEVTIAD 414
+G+ ++DRF+MRIHKRLIDLHSP+++VKQITSISIEPGVEVEVTIAD
Sbjct: 70 EGSKSWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 116
>ref|NP_201036.1| 40S ribosomal protein S20 (RPS20C) [Arabidopsis thaliana]
gi|22331606|ref|NP_190089.2| 40S ribosomal protein S20
(RPS20A) [Arabidopsis thaliana]
gi|21542443|sp|P49200|RS20_ARATH 40S ribosomal protein
S20 gi|11762182|gb|AAG40369.1|AF325017_1 AT5g62300
[Arabidopsis thaliana]
gi|13877519|gb|AAK43837.1|AF370460_1 40S ribosomal
protein S20 [Arabidopsis thaliana]
gi|20465624|gb|AAM20143.1| putative 40S ribsomomal
protein [Arabidopsis thaliana]
gi|21281054|gb|AAM45072.1| putative 40S ribsomomal
protein [Arabidopsis thaliana]
gi|21553799|gb|AAM62892.1| ribosomal protein S20-like
protein [Arabidopsis thaliana]
Length = 124
Score = 181 bits (458), Expect = 8e-45
Identities = 87/112 (77%), Positives = 103/112 (91%)
Frame = +1
Query: 79 KAGVEAEAPQVHRIRITLTSKNVKNLEKVCADLIKGAKEKQLKVKGPVRMPTKVLRITTR 258
KAG+E Q+H+IRITL+SKNVKNLEKVC DL++GAK+K+L+VKGPVRMPTKVL+ITTR
Sbjct: 12 KAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTR 71
Query: 259 KAPSGQGTNTFDRFEMRIHKRLIDLHSPADVVKQITSISIEPGVEVEVTIAD 414
KAP G+GTNT+DRFE+R+HKR+IDL S DVVKQITSI+IEPGVEVEVTIAD
Sbjct: 72 KAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123
