Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011378A_C01 KMC011378A_c01
(653 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191950.1| putative protein; protein id: At4g00400.1 [Arab... 191 6e-48
gb|AAL32544.1| Unknown protein [Arabidopsis thaliana] gi|2025989... 189 3e-47
ref|NP_171667.1| hypothetical protein; protein id: At1g01610.1, ... 189 3e-47
ref|NP_181346.1| unknown protein; protein id: At2g38110.1, suppo... 151 6e-36
ref|NP_563768.1| expressed protein; protein id: At1g06520.1, sup... 136 3e-31
>ref|NP_191950.1| putative protein; protein id: At4g00400.1 [Arabidopsis thaliana]
gi|7485267|pir||T01531 hypothetical protein A_IG005I10.4
- Arabidopsis thaliana gi|2252827|gb|AAB62826.1|
A_IG005I10.4 gene product [Arabidopsis thaliana]
gi|6049869|gb|AAF02784.1|AF195115_4 F5I10.4 gene product
[Arabidopsis thaliana] gi|7267127|emb|CAB80798.1|
putative protein [Arabidopsis thaliana]
Length = 289
Score = 191 bits (486), Expect = 6e-48
Identities = 92/112 (82%), Positives = 101/112 (90%)
Frame = -2
Query: 652 LFAELSDRIVPVAVDCKQSMFYGTTVRGVKFWDPYFFFMNPRPVYEATFLDRLPEEMSCK 473
LFAELSDRIVPVA++CKQ MF GTTVRGVKFWDPYFFFMNPRP YEATFLDRLPEEM+
Sbjct: 178 LFAELSDRIVPVAMNCKQGMFNGTTVRGVKFWDPYFFFMNPRPSYEATFLDRLPEEMTVN 237
Query: 472 AGGKSSIEVANHVQKVLGDVLGFECTGLTRKDKYLLLGGNDGKVESMYSGQK 317
GGK+ IEVAN+VQKV+G VLGFECT LTRKDKYLLLGGNDGKVES+ + +K
Sbjct: 238 GGGKTPIEVANYVQKVIGAVLGFECTELTRKDKYLLLGGNDGKVESINNTKK 289
>gb|AAL32544.1| Unknown protein [Arabidopsis thaliana] gi|20259892|gb|AAM13293.1|
unknown protein [Arabidopsis thaliana]
Length = 503
Score = 189 bits (480), Expect = 3e-47
Identities = 90/107 (84%), Positives = 97/107 (90%)
Frame = -2
Query: 652 LFAELSDRIVPVAVDCKQSMFYGTTVRGVKFWDPYFFFMNPRPVYEATFLDRLPEEMSCK 473
LFAELSDRIVPVA++CKQ MF GTTVRGVKFWDPYFFFMNPRP YEATFLDRLPEEM+
Sbjct: 390 LFAELSDRIVPVAMNCKQGMFNGTTVRGVKFWDPYFFFMNPRPSYEATFLDRLPEEMTVN 449
Query: 472 AGGKSSIEVANHVQKVLGDVLGFECTGLTRKDKYLLLGGNDGKVESM 332
GGK+ EVAN+VQKV+G VLGFECT LTRKDKYLLLGGNDGKVES+
Sbjct: 450 GGGKTPFEVANYVQKVIGGVLGFECTELTRKDKYLLLGGNDGKVESI 496
>ref|NP_171667.1| hypothetical protein; protein id: At1g01610.1, supported by cDNA:
gi_17064779, supported by cDNA: gi_20259891 [Arabidopsis
thaliana] gi|25372669|pir||H86146 hypothetical protein
F22L4.15 - Arabidopsis thaliana
gi|8920597|gb|AAF81319.1|AC061957_15 Contains similarity
to a hypothetical protein F16M14.4 gi|7485589 from
Arabidopsis thaliana BAC F16M14 gb|T01243
Length = 503
Score = 189 bits (480), Expect = 3e-47
Identities = 90/107 (84%), Positives = 97/107 (90%)
Frame = -2
Query: 652 LFAELSDRIVPVAVDCKQSMFYGTTVRGVKFWDPYFFFMNPRPVYEATFLDRLPEEMSCK 473
LFAELSDRIVPVA++CKQ MF GTTVRGVKFWDPYFFFMNPRP YEATFLDRLPEEM+
Sbjct: 390 LFAELSDRIVPVAMNCKQGMFNGTTVRGVKFWDPYFFFMNPRPSYEATFLDRLPEEMTVN 449
Query: 472 AGGKSSIEVANHVQKVLGDVLGFECTGLTRKDKYLLLGGNDGKVESM 332
GGK+ EVAN+VQKV+G VLGFECT LTRKDKYLLLGGNDGKVES+
Sbjct: 450 GGGKTPFEVANYVQKVIGGVLGFECTELTRKDKYLLLGGNDGKVESI 496
>ref|NP_181346.1| unknown protein; protein id: At2g38110.1, supported by cDNA:
gi_17065289 [Arabidopsis thaliana]
gi|7485589|pir||T01243 hypothetical protein At2g38110
[imported] - Arabidopsis thaliana
gi|3335359|gb|AAC27160.1| unknown protein [Arabidopsis
thaliana] gi|17065290|gb|AAL32799.1| Unknown protein
[Arabidopsis thaliana] gi|21387145|gb|AAM47976.1|
unknown protein [Arabidopsis thaliana]
Length = 501
Score = 151 bits (382), Expect = 6e-36
Identities = 72/104 (69%), Positives = 84/104 (80%)
Frame = -2
Query: 652 LFAELSDRIVPVAVDCKQSMFYGTTVRGVKFWDPYFFFMNPRPVYEATFLDRLPEEMSCK 473
LFAEL+DRIVPVA++ KQSMF GTT RG K DPYF FMNPRP YE TFL ++P E++CK
Sbjct: 392 LFAELTDRIVPVAINTKQSMFNGTTTRGYKLLDPYFAFMNPRPTYEITFLKQIPAELTCK 451
Query: 472 AGGKSSIEVANHVQKVLGDVLGFECTGLTRKDKYLLLGGNDGKV 341
GGKS IEVAN++Q+VLG LGFECT TRKDKY +L G DG+V
Sbjct: 452 -GGKSPIEVANYIQRVLGGTLGFECTNFTRKDKYAMLAGTDGRV 494
>ref|NP_563768.1| expressed protein; protein id: At1g06520.1, supported by cDNA:
94974. [Arabidopsis thaliana] gi|25372666|pir||G86200
protein F12K11.15 [imported] - Arabidopsis thaliana
gi|6692682|gb|AAF24816.1|AC007592_9 F12K11.15
[Arabidopsis thaliana]
Length = 585
Score = 136 bits (342), Expect = 3e-31
Identities = 69/104 (66%), Positives = 80/104 (76%)
Frame = -2
Query: 652 LFAELSDRIVPVAVDCKQSMFYGTTVRGVKFWDPYFFFMNPRPVYEATFLDRLPEEMSCK 473
LFAEL++ IVPVAVD + SMFYGTT G+K DP FF MNPRPVY L +LP+EM+C
Sbjct: 482 LFAELTEDIVPVAVDARVSMFYGTTASGLKCLDPIFFLMNPRPVYCLEILKKLPKEMTC- 540
Query: 472 AGGKSSIEVANHVQKVLGDVLGFECTGLTRKDKYLLLGGNDGKV 341
AGGKSS EVAN +Q L VLGFECT LTR+DKYL+L GN+G V
Sbjct: 541 AGGKSSFEVANFIQGELARVLGFECTNLTRRDKYLVLAGNEGIV 584
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 617,215,423
Number of Sequences: 1393205
Number of extensions: 14878752
Number of successful extensions: 48081
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 42716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47560
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
