Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010025A_C01 KMC010025A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC01238.1| RNA Binding Protein 47 [Nicotiana plumbaginifolia] 135 5e-31
pir||T01932 RNA binding protein homolog - common tobacco (fragme... 135 5e-31
pir||T03934 DNA binding protein ACBF - common tobacco gi|1899188... 123 2e-27
pir||F96532 probable RNA binding protein [imported] - Arabidopsi... 119 3e-26
ref|NP_175383.1| RNA binding protein 47 (RBP47), putative; prote... 119 3e-26
>emb|CAC01238.1| RNA Binding Protein 47 [Nicotiana plumbaginifolia]
Length = 428
Score = 135 bits (339), Expect = 5e-31
Identities = 65/99 (65%), Positives = 76/99 (76%), Gaps = 4/99 (4%)
Frame = -1
Query: 613 FGDVVSVKIPVGKGCGFVQFADRKNAEEPIHALNGTVIGKQTVRLSWGRSPGNKHWRSDS 434
FG+VVSVKIP GKGCGFVQF+DR +A+E I L+G +IGKQ VRLSWGRSP NK R+DS
Sbjct: 318 FGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDS 377
Query: 433 ----DGGHYGGQGYGGHGYGARQNQDMGMHPTAAIQGAS 329
+GG+ G Q YGG+GYGA QNQD GM+ T A GAS
Sbjct: 378 GSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGAS 416
Score = 35.4 bits (80), Expect = 0.59
Identities = 26/69 (37%), Positives = 37/69 (52%), Gaps = 9/69 (13%)
Frame = -1
Query: 610 GDVVSVKIPVGKGCG------FVQFADRKNAEEPIHALNGTVI--GKQTVRLSW-GRSPG 458
G+V+SVKI K G FV+F AE+ + + NGT++ +Q RL+W G S G
Sbjct: 108 GEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTG 167
Query: 457 NKHWRSDSD 431
K + SD
Sbjct: 168 EKRAETGSD 176
>pir||T01932 RNA binding protein homolog - common tobacco (fragment)
gi|2708532|gb|AAB92518.1| putative RNA binding protein
[Nicotiana tabacum]
Length = 482
Score = 135 bits (339), Expect = 5e-31
Identities = 65/99 (65%), Positives = 76/99 (76%), Gaps = 4/99 (4%)
Frame = -1
Query: 613 FGDVVSVKIPVGKGCGFVQFADRKNAEEPIHALNGTVIGKQTVRLSWGRSPGNKHWRSDS 434
FG+VVSVKIP GKGCGFVQF+DR +A+E I L+G +IGKQ VRLSWGRSP NK R+DS
Sbjct: 372 FGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRADS 431
Query: 433 ----DGGHYGGQGYGGHGYGARQNQDMGMHPTAAIQGAS 329
+GG+ G Q YGG+GYGA QNQD GM+ T A GAS
Sbjct: 432 GSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGAS 470
Score = 36.2 bits (82), Expect = 0.35
Identities = 26/69 (37%), Positives = 37/69 (52%), Gaps = 9/69 (13%)
Frame = -1
Query: 610 GDVVSVKIPVGKGCG------FVQFADRKNAEEPIHALNGTVI--GKQTVRLSW-GRSPG 458
G+V+SVKI K G FV+F AE+ + + NGT++ +Q RL+W G S G
Sbjct: 162 GEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQPFRLNWAGFSTG 221
Query: 457 NKHWRSDSD 431
K + SD
Sbjct: 222 EKRAETGSD 230
>pir||T03934 DNA binding protein ACBF - common tobacco gi|1899188|gb|AAC49850.1|
DNA binding protein ACBF [Nicotiana tabacum]
Length = 428
Score = 123 bits (309), Expect = 2e-27
Identities = 64/100 (64%), Positives = 76/100 (76%), Gaps = 5/100 (5%)
Frame = -1
Query: 613 FGDVVSVKIPVGKGCGFVQFADRKNAEEPIHALNGTVIGKQTVRLSWGRSPGNKHWRSDS 434
FG+VVSVKIP GKGCGFVQF+DR +A+E I L+G +IGKQ VRLSWGR+ NK R+DS
Sbjct: 318 FGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRT-ANKQMRADS 376
Query: 433 ----DGGHYGGQGYGGHGYGARQNQDMGMHPT-AAIQGAS 329
+GG+ G Q YGG+GYGA QNQD GM+ T AA GAS
Sbjct: 377 GSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAAYGAS 416
Score = 36.2 bits (82), Expect = 0.35
Identities = 26/69 (37%), Positives = 37/69 (52%), Gaps = 9/69 (13%)
Frame = -1
Query: 610 GDVVSVKIPVGKGCG------FVQFADRKNAEEPIHALNGTVI--GKQTVRLSW-GRSPG 458
G+V+SVKI K G FV+F AE+ + + NGT++ +Q RL+W G S G
Sbjct: 108 GEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQPFRLNWAGFSTG 167
Query: 457 NKHWRSDSD 431
K + SD
Sbjct: 168 EKRAETGSD 176
>pir||F96532 probable RNA binding protein [imported] - Arabidopsis thaliana
gi|10120421|gb|AAG13046.1|AC011807_5 Putative RNA
binding protein [Arabidopsis thaliana]
Length = 468
Score = 119 bits (298), Expect = 3e-26
Identities = 68/101 (67%), Positives = 77/101 (75%), Gaps = 6/101 (5%)
Frame = -1
Query: 613 FGDVVSVKIPVGKGCGFVQFADRKNAEEPIHALNGTVIGKQTVRLSWGRSPGNKHWRSDS 434
FG+VVSVKIPVGKGCGFVQFA+R++AEE I LNGTVIGK TVRLSWGRSP NK WRSDS
Sbjct: 373 FGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDS 431
Query: 433 ----DGGHYGGQGYGGHGYGARQNQDMGMHPT--AAIQGAS 329
+GG+ GQGY +GY NQD M+ T AA+ GAS
Sbjct: 432 GNQWNGGYSRGQGY-NNGYA---NQDSNMYATAAAAVPGAS 468
>ref|NP_175383.1| RNA binding protein 47 (RBP47), putative; protein id: At1g49600.1
[Arabidopsis thaliana]
Length = 445
Score = 119 bits (298), Expect = 3e-26
Identities = 68/101 (67%), Positives = 77/101 (75%), Gaps = 6/101 (5%)
Frame = -1
Query: 613 FGDVVSVKIPVGKGCGFVQFADRKNAEEPIHALNGTVIGKQTVRLSWGRSPGNKHWRSDS 434
FG+VVSVKIPVGKGCGFVQFA+R++AEE I LNGTVIGK TVRLSWGRSP NK WRSDS
Sbjct: 350 FGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDS 408
Query: 433 ----DGGHYGGQGYGGHGYGARQNQDMGMHPT--AAIQGAS 329
+GG+ GQGY +GY NQD M+ T AA+ GAS
Sbjct: 409 GNQWNGGYSRGQGY-NNGYA---NQDSNMYATAAAAVPGAS 445
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,743,684
Number of Sequences: 1393205
Number of extensions: 12148107
Number of successful extensions: 38551
Number of sequences better than 10.0: 510
Number of HSP's better than 10.0 without gapping: 32393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37568
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
