Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005121A_C01 KMC005121A_c01
(751 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05145|MDHP_MESCR Malate dehydrogenase [NADP], chloroplast pr... 181 8e-45
sp|P21528|MDHP_PEA Malate dehydrogenase [NADP], chloroplast prec... 177 2e-43
sp|O48902|MDHP_MEDSA Malate dehydrogenase [NADP], chloroplast pr... 175 5e-43
sp|P52426|MDHP_SPIOL Malate dehydrogenase [NADP], chloroplast pr... 172 5e-42
ref|NP_568875.1| NADP-dependent malate dehydrogenase; protein id... 170 2e-41
>sp|Q05145|MDHP_MESCR Malate dehydrogenase [NADP], chloroplast precursor (NADP-MDH)
gi|421790|pir||S33066 malate dehydrogenase (NADP) (EC
1.1.1.82) - common ice plant gi|19530|emb|CAA45270.1|
malate dehydrogenase (NADP+) [Mesembryanthemum
crystallinum]
Length = 441
Score = 181 bits (460), Expect = 8e-45
Identities = 84/97 (86%), Positives = 91/97 (93%)
Frame = -3
Query: 749 RSLVTPTPEGDWFSSGVYSSGNPYGIAEDIVFSMPCRSKGDGDYELVKDVLIDDYLRQRI 570
+SLVTPTPEGDWFSS VY++GNPYGIAED+VFSMPCRSKGDGDYELVKDV+ DDYLRQRI
Sbjct: 344 KSLVTPTPEGDWFSSAVYTNGNPYGIAEDLVFSMPCRSKGDGDYELVKDVVFDDYLRQRI 403
Query: 569 AKSEAELLAEKRCTAHLTGEGIAVCDLPSGDTMPPQE 459
KSE ELLAEKRCTAHLTGEG+AVCDLP+GDTM P E
Sbjct: 404 KKSEEELLAEKRCTAHLTGEGVAVCDLPAGDTMLPGE 440
>sp|P21528|MDHP_PEA Malate dehydrogenase [NADP], chloroplast precursor (NADP-MDH)
gi|481222|pir||S38346 malate dehydrogenase (NADP) (EC
1.1.1.82) precursor, chloroplast - garden pea
gi|397475|emb|CAA52614.1| malate dehydrogenase (NADP+)
[Pisum sativum]
Length = 441
Score = 177 bits (448), Expect = 2e-43
Identities = 83/97 (85%), Positives = 91/97 (93%)
Frame = -3
Query: 749 RSLVTPTPEGDWFSSGVYSSGNPYGIAEDIVFSMPCRSKGDGDYELVKDVLIDDYLRQRI 570
RSL+TPTPEGDWFSSGVY++GNPYGIAEDIVFSMPCRSKGDGDYELV DV+ DDYLRQ++
Sbjct: 345 RSLITPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVNDVIFDDYLRQKL 404
Query: 569 AKSEAELLAEKRCTAHLTGEGIAVCDLPSGDTMPPQE 459
AK+EAELLAEK+C AHLTGEGIAVCDLP GDTM P E
Sbjct: 405 AKTEAELLAEKKCVAHLTGEGIAVCDLP-GDTMLPGE 440
>sp|O48902|MDHP_MEDSA Malate dehydrogenase [NADP], chloroplast precursor (NADP-MDH)
gi|2827076|gb|AAB99753.1| malate dehydrogenase precursor
[Medicago sativa]
Length = 437
Score = 175 bits (444), Expect = 5e-43
Identities = 82/97 (84%), Positives = 91/97 (93%)
Frame = -3
Query: 749 RSLVTPTPEGDWFSSGVYSSGNPYGIAEDIVFSMPCRSKGDGDYELVKDVLIDDYLRQRI 570
RSL+ PTPEGDWFS+GVY++GNPYGIAEDIVFSMPCRSKGDGDYELVKDV+ DDYLRQ++
Sbjct: 341 RSLIIPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRQKL 400
Query: 569 AKSEAELLAEKRCTAHLTGEGIAVCDLPSGDTMPPQE 459
AK+EAELLAEK+C AHLTGEGIAVCDLP GDTM P E
Sbjct: 401 AKTEAELLAEKKCVAHLTGEGIAVCDLP-GDTMLPGE 436
>sp|P52426|MDHP_SPIOL Malate dehydrogenase [NADP], chloroplast precursor (NADP-MDH)
gi|1076266|pir||S52268 malate dehydrogenase (NADP) (EC
1.1.1.82) precursor, chloroplast - spinach
gi|642352|emb|CAA58848.1| malate dehydrogenase (NADP+)
[Spinacia oleracea]
Length = 435
Score = 172 bits (436), Expect = 5e-42
Identities = 78/95 (82%), Positives = 87/95 (91%)
Frame = -3
Query: 743 LVTPTPEGDWFSSGVYSSGNPYGIAEDIVFSMPCRSKGDGDYELVKDVLIDDYLRQRIAK 564
L+TPTP GDWF SGVY++GNPYGIAED+++SMPCRSKGDGDYELVKDV+ DDYLR+RI
Sbjct: 340 LITPTPPGDWFPSGVYTNGNPYGIAEDLIYSMPCRSKGDGDYELVKDVIFDDYLRKRIKT 399
Query: 563 SEAELLAEKRCTAHLTGEGIAVCDLPSGDTMPPQE 459
SE ELLAEKRCTAHLTGEGIAVCDLP+GDTM P E
Sbjct: 400 SEEELLAEKRCTAHLTGEGIAVCDLPAGDTMLPGE 434
>ref|NP_568875.1| NADP-dependent malate dehydrogenase; protein id: At5g58330.1,
supported by cDNA: 25200., supported by cDNA:
gi_18377750 [Arabidopsis thaliana]
gi|23297668|gb|AAN13004.1| NADP-dependent malate
dehydrogenase [Arabidopsis thaliana]
Length = 443
Score = 170 bits (431), Expect = 2e-41
Identities = 82/97 (84%), Positives = 86/97 (88%)
Frame = -3
Query: 749 RSLVTPTPEGDWFSSGVYSSGNPYGIAEDIVFSMPCRSKGDGDYELVKDVLIDDYLRQRI 570
+SLVTPTPEGDWFS+GVY+ GNPYGI E +VFSMPCRSKGDGDYELVKDV IDDYLRQRI
Sbjct: 346 KSLVTPTPEGDWFSTGVYTDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYLRQRI 405
Query: 569 AKSEAELLAEKRCTAHLTGEGIAVCDLPSGDTMPPQE 459
AKSEAELLAEKRC AHLTGEGIA CDL DTM P E
Sbjct: 406 AKSEAELLAEKRCVAHLTGEGIAYCDLGPVDTMLPGE 442
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 613,316,606
Number of Sequences: 1393205
Number of extensions: 13052318
Number of successful extensions: 34172
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 33373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34140
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
