KMC004651A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC004651A_C01 KMC004651A_c01
GACAAAATGAGTGGGGTGGAGTGTATATTTTGAATAAGAATGGGGTGGAGTGTTTTTCTA
GCAAACCTTGAGGGGGGTAAGTGTATTTTACTCAAAAAAGAAAGACACAAAGTTACACTG
ACAGTAGTAGCATATTTGGATTAACTTTTATTTCTCGAGAATCATAGCTTACTCCATCAA
ATTTTATTGTTGACTTTAAGAATCAACTGCGGAAGAATTTCGACGAACAATAACTTAGTG
GCTAGTTTTAGTGGTGTATCATCTTCCCAGTGAGTCCACAAGTGAGAGCTTCTCTAGGTA
TGTTCTTCACCTTATGAACAGCCTCGGCGAAAATCACACCCATTCCCATATGCAAATGCG
GCTCAATGTGACAATGGGAACGCCCAAACACCAGGGGTTATCCCGCCTTAAACCTCAAAG
CAGTCCAACCATAAGGGAAAATCACCGCGGTATTTCTCAACGGAGCGCGAGTCAAGTTGA
AACTCTTCTCATCAACACCAGGTCTAAACTTCCCTTCACCATACCCCAGAACCCAGAAAT
CATGCCCATGCAAATGCCATGGATGAATCTCACTCCCATTCCCATTCAACTGGTTAGCAT
TCTGCAGAATCACATCAACAACCTCGTTCAGCTGGAACATGTAAACCCCATTTCCGACCG
TCGTGTTGCGGAACACCGGACTCTGGAAAATGTTGT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004651A_C01 KMC004651A_c01
(696 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA75577.1| L-ascorbate oxidase [Medicago truncatula] 255 4e-67
gb|AAM94614.1| ascorbate oxidase precursor [Glycine max] 243 2e-63
gb|AAF20932.1|AF206722_1 ascorbate oxidase [Brassica juncea] 212 5e-54
gb|AAF20933.1|AF206723_1 ascorbate oxidase [Brassica juncea] 212 5e-54
ref|NP_680176.1| Expressed protein; protein id: At5g21105.1 [Ara... 208 7e-53
>emb|CAA75577.1| L-ascorbate oxidase [Medicago truncatula]
Length = 569
Score = 255 bits (652), Expect = 4e-67
Identities = 121/141 (85%), Positives = 129/141 (90%)
Frame = -3
Query: 694 NIFQSPVFRNTTVGNGVYMFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVLGYGE 515
+IF++PV NTT GNGVY FQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVLGYGE
Sbjct: 425 DIFKNPVNPNTTTGNGVYTFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVLGYGE 484
Query: 514 GKFRPGVDEKSFNLTRAPLRNTAVIFPYGWTALRFKAG*PLVFGRSHCHIEPHLHMGMGV 335
G+FRPGVDE+SFNLTRAPLRNTAVIFPYGWTALRFKA P V+ HCHIEPHLHMGMGV
Sbjct: 485 GRFRPGVDERSFNLTRAPLRNTAVIFPYGWTALRFKADNPGVWA-FHCHIEPHLHMGMGV 543
Query: 334 IFAEAVHKVKNIPREALTCGL 272
IFAEAVHKV+NIP+EAL C L
Sbjct: 544 IFAEAVHKVRNIPKEALKCVL 564
>gb|AAM94614.1| ascorbate oxidase precursor [Glycine max]
Length = 429
Score = 243 bits (620), Expect = 2e-63
Identities = 118/146 (80%), Positives = 125/146 (84%)
Frame = -3
Query: 694 NIFQSPVFRNTTVGNGVYMFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVLGYGE 515
+IF PV N T+GNGVYMF LNEVVDVILQN+NQL+ NGSEIHPWHLHGHDFWVLGYGE
Sbjct: 280 DIFNPPVNPNATIGNGVYMFNLNEVVDVILQNSNQLSVNGSEIHPWHLHGHDFWVLGYGE 339
Query: 514 GKFRPGVDEKSFNLTRAPLRNTAVIFPYGWTALRFKAG*PLVFGRSHCHIEPHLHMGMGV 335
GKF+ G DEK FNLT APLRNTAVIFPYGWTALRFKA P V+ HCHIEPHLHMGMGV
Sbjct: 340 GKFKLG-DEKKFNLTHAPLRNTAVIFPYGWTALRFKADNPGVWA-FHCHIEPHLHMGMGV 397
Query: 334 IFAEAVHKVKNIPREALTCGLTGKMI 257
IFAE VHKV IPREALTCGLTGK +
Sbjct: 398 IFAEGVHKVGKIPREALTCGLTGKKL 423
>gb|AAF20932.1|AF206722_1 ascorbate oxidase [Brassica juncea]
Length = 574
Score = 212 bits (539), Expect = 5e-54
Identities = 99/152 (65%), Positives = 116/152 (76%)
Frame = -3
Query: 694 NIFQSPVFRNTTVGNGVYMFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVLGYGE 515
+I P RNTT GNG+Y+F N VDVILQNAN L+ N SEIHPWHLHGHDFWVLGYGE
Sbjct: 424 DIMNPPRNRNTTKGNGIYVFPFNVTVDVILQNANGLDANASEIHPWHLHGHDFWVLGYGE 483
Query: 514 GKFRPGVDEKSFNLTRAPLRNTAVIFPYGWTALRFKAG*PLVFGRSHCHIEPHLHMGMGV 335
GKFRPGVDEK++NL PL+NT +FPYGWTALRF P V+ HCHIEPHLHMGMGV
Sbjct: 484 GKFRPGVDEKTYNLKNPPLKNTVALFPYGWTALRFVTDNPGVW-FFHCHIEPHLHMGMGV 542
Query: 334 IFAEAVHKVKNIPREALTCGLTGKMIHH*N*P 239
+FAE ++++ IP EAL CGLT + + + N P
Sbjct: 543 VFAEGLNRIGKIPDEALGCGLTKQFLMNRNNP 574
>gb|AAF20933.1|AF206723_1 ascorbate oxidase [Brassica juncea]
Length = 573
Score = 212 bits (539), Expect = 5e-54
Identities = 99/152 (65%), Positives = 116/152 (76%)
Frame = -3
Query: 694 NIFQSPVFRNTTVGNGVYMFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVLGYGE 515
+I P RNTT GNG+Y+F N VDVILQNAN L+ N SEIHPWHLHGHDFWVLGYGE
Sbjct: 423 DIMNPPRNRNTTKGNGIYVFPFNVTVDVILQNANGLDANASEIHPWHLHGHDFWVLGYGE 482
Query: 514 GKFRPGVDEKSFNLTRAPLRNTAVIFPYGWTALRFKAG*PLVFGRSHCHIEPHLHMGMGV 335
GKFRPGVDEK++NL PL+NT +FPYGWTALRF P V+ HCHIEPHLHMGMGV
Sbjct: 483 GKFRPGVDEKTYNLKNPPLKNTVALFPYGWTALRFVTDNPGVW-FFHCHIEPHLHMGMGV 541
Query: 334 IFAEAVHKVKNIPREALTCGLTGKMIHH*N*P 239
+FAE ++++ IP EAL CGLT + + + N P
Sbjct: 542 VFAEGLNRIGKIPDEALGCGLTKQFLMNRNNP 573
>ref|NP_680176.1| Expressed protein; protein id: At5g21105.1 [Arabidopsis thaliana]
Length = 571
Score = 208 bits (529), Expect = 7e-53
Identities = 93/150 (62%), Positives = 116/150 (77%)
Frame = -3
Query: 694 NIFQSPVFRNTTVGNGVYMFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVLGYGE 515
+I P F NTT GNG+Y+F N VDVI+QNAN L G SEIHPWHLHGHDFWVLGYG+
Sbjct: 421 DIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGIVSEIHPWHLHGHDFWVLGYGD 480
Query: 514 GKFRPGVDEKSFNLTRAPLRNTAVIFPYGWTALRFKAG*PLVFGRSHCHIEPHLHMGMGV 335
GKF+PG+DEK++NL PLRNTA+++PYGWTA+RF P V+ HCHIEPHLHMGMGV
Sbjct: 481 GKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVW-FFHCHIEPHLHMGMGV 539
Query: 334 IFAEAVHKVKNIPREALTCGLTGKMIHH*N 245
+FAE ++++ +P EAL CGLT + + + N
Sbjct: 540 VFAEGLNRIGKVPDEALGCGLTKQFLMNRN 569
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 635,321,684
Number of Sequences: 1393205
Number of extensions: 14416428
Number of successful extensions: 40913
Number of sequences better than 10.0: 339
Number of HSP's better than 10.0 without gapping: 36136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39241
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MFBL022g09_f |
BP042375 |
1 |
329 |
2 |
SPD080f11_f |
BP050404 |
42 |
184 |
3 |
MR073c03_f |
BP081597 |
112 |
485 |
4 |
MF066b04_f |
BP031795 |
112 |
563 |
5 |
MF059e03_f |
BP031415 |
115 |
613 |
6 |
MPDL002g10_f |
AV776643 |
115 |
395 |
7 |
MF003h04_f |
BP028416 |
162 |
598 |
8 |
MF024f09_f |
BP029544 |
164 |
267 |
9 |
MF045d01_f |
BP030662 |
170 |
705 |
10 |
SPD086a09_f |
BP050835 |
171 |
646 |
11 |
MF004h02_f |
BP028465 |
171 |
615 |
12 |
MF066e10_f |
BP031825 |
171 |
653 |
13 |
MPD057c04_f |
AV773804 |
175 |
660 |
14 |
SPD028g08_f |
BP046246 |
187 |
713 |
15 |
MPD087c10_f |
AV775707 |
189 |
647 |
16 |
SPDL073c12_f |
BP056516 |
196 |
705 |
17 |
MFB067b04_f |
BP038838 |
196 |
757 |
18 |
SPD004a10_f |
BP044286 |
202 |
657 |
19 |
MFB062e03_f |
BP038510 |
204 |
735 |
20 |
MF085c03_f |
BP032764 |
205 |
751 |
21 |
MF090a01_f |
BP032999 |
219 |
759 |
22 |
MF090f09_f |
BP033034 |
221 |
740 |
23 |
MFBL018b12_f |
BP042150 |
261 |
620 |
|
Lotus japonicus
Kazusa DNA Research Institute