Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004431A_C01 KMC004431A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_714416.1| MutS-like mismatch repair protein, ATPases [Lep... 33 3.1
ref|NP_248321.1| M. jannaschii predicted coding region MJ1321 [M... 32 5.4
gb|AAF34294.1|AC005941_6 L5204.7 [Leishmania major] gi|21629325|... 31 9.1
>ref|NP_714416.1| MutS-like mismatch repair protein, ATPases [Leptospira interrogans
serovar lai str. 56601]
gi|24198324|gb|AAN51434.1|AE011576_10 MutS-like mismatch
repair protein, ATPases [Leptospira interrogans serovar
lai str. 56601]
Length = 610
Score = 32.7 bits (73), Expect = 3.1
Identities = 33/104 (31%), Positives = 50/104 (47%)
Frame = -1
Query: 482 FALSVLKRS*VDKNKNTWKCGISFFGAVFV*LSEVVSSITASDINTLVLVYVGRLDD*EG 303
F+L VLK +N++ + GISFF A LSE+V I + + LVL LD+
Sbjct: 472 FSLPVLKIHTSMRNEDNLEEGISFFYAEVRRLSEIVKKIRDKNSSHLVL-----LDEILK 526
Query: 302 GLNPKEFRPVFCSFICSHI*RRKGRIVLHEEIQDSLTVHVQFVL 171
G N +E R + C I + +K R ++ D V+ V+
Sbjct: 527 GTNTRE-RSLACKGILKEL--KKNRTIVFVTSHDLELAKVEGVI 567
>ref|NP_248321.1| M. jannaschii predicted coding region MJ1321 [Methanococcus
jannaschii] gi|2128790|pir||H64464 hypothetical protein
MJ1321 - Methanococcus jannaschii
gi|1591961|gb|AAB99334.1| M. jannaschii predicted coding
region MJ1321 [Methanococcus jannaschii]
Length = 713
Score = 32.0 bits (71), Expect = 5.4
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = +1
Query: 388 NYTNTAPKNEIPHFHVFLFLST*LLFSTDNAKGIMNKLSSVFN 516
NY A K E+P F+ + + FSTD+ +GI+ ++ S FN
Sbjct: 383 NYNKIANKTELPKFN---YANRWKYFSTDDIRGIIKEIKSEFN 422
>gb|AAF34294.1|AC005941_6 L5204.7 [Leishmania major] gi|21629325|gb|AAM69002.1|AC125735_32
L5204.7 [Leishmania major]
Length = 1660
Score = 31.2 bits (69), Expect = 9.1
Identities = 23/59 (38%), Positives = 29/59 (48%), Gaps = 2/59 (3%)
Frame = +2
Query: 284 TPLGLIPPLNHPTSQH--KPAPMCLYLMQ*LRILLPTTIQTRLQKMRSHISMYSYFYPP 454
TPL L PP + P QH P P Q R L P+T +T + + S S+YS PP
Sbjct: 688 TPLQLPPPQS-PALQHGFSPPPSFHQQQQKQRPLDPSTPRTSMMSIASSSSLYSGSLPP 745
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,614,602
Number of Sequences: 1393205
Number of extensions: 10158885
Number of successful extensions: 21121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21110
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
