Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003033A_C01 KMC003033A_c01
(984 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568218.1| putative protein; protein id: At5g09850.1, supp... 103 4e-21
dbj|BAB09406.1| gb|AAF19567.1~gene_id:MYH9.6~similar to unknown ... 103 4e-21
gb|AAL25557.1| AT5g09850/MYH9_6 [Arabidopsis thaliana] gi|201472... 103 4e-21
gb|AAM08816.1|AC090486_26 Hypothetical protein [Oryza sativa] gi... 54 3e-06
dbj|BAC16486.1| contains ESTs AU092606(C52561),AU063213(C53672),... 54 5e-06
>ref|NP_568218.1| putative protein; protein id: At5g09850.1, supported by cDNA:
gi_16648729 [Arabidopsis thaliana]
Length = 353
Score = 103 bits (257), Expect = 4e-21
Identities = 63/130 (48%), Positives = 80/130 (61%), Gaps = 9/130 (6%)
Frame = -2
Query: 983 FAYSPNPHNGSSGSDRNHSEAEP--KPKVI---PRQTPPKPT----PSPSVTTLAFTPQN 831
F YSP P NG S S +N + EP KP+ + PR+ P P PSPS T+
Sbjct: 236 FGYSPVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIP----- 290
Query: 830 KQREQRNSNFEAEKLASARKRLQENYRDAENAKKQRTIQVMDIHELPKSKSKNTFFGKNQ 651
+ +E + +F+ +ARKRLQ+NYR AENAKKQRTIQVMDIH++PK K K FF + +
Sbjct: 291 RDKEHKEVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPK-KGGFFPR-K 343
Query: 650 GGGSSQGRHW 621
GG S GRHW
Sbjct: 344 GGSSQGGRHW 353
>dbj|BAB09406.1| gb|AAF19567.1~gene_id:MYH9.6~similar to unknown protein
[Arabidopsis thaliana]
Length = 361
Score = 103 bits (257), Expect = 4e-21
Identities = 63/130 (48%), Positives = 80/130 (61%), Gaps = 9/130 (6%)
Frame = -2
Query: 983 FAYSPNPHNGSSGSDRNHSEAEP--KPKVI---PRQTPPKPT----PSPSVTTLAFTPQN 831
F YSP P NG S S +N + EP KP+ + PR+ P P PSPS T+
Sbjct: 244 FGYSPVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIP----- 298
Query: 830 KQREQRNSNFEAEKLASARKRLQENYRDAENAKKQRTIQVMDIHELPKSKSKNTFFGKNQ 651
+ +E + +F+ +ARKRLQ+NYR AENAKKQRTIQVMDIH++PK K K FF + +
Sbjct: 299 RDKEHKEVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPK-KGGFFPR-K 351
Query: 650 GGGSSQGRHW 621
GG S GRHW
Sbjct: 352 GGSSQGGRHW 361
>gb|AAL25557.1| AT5g09850/MYH9_6 [Arabidopsis thaliana] gi|20147241|gb|AAM10334.1|
AT5g09850/MYH9_6 [Arabidopsis thaliana]
Length = 302
Score = 103 bits (257), Expect = 4e-21
Identities = 63/130 (48%), Positives = 80/130 (61%), Gaps = 9/130 (6%)
Frame = -2
Query: 983 FAYSPNPHNGSSGSDRNHSEAEP--KPKVI---PRQTPPKPT----PSPSVTTLAFTPQN 831
F YSP P NG S S +N + EP KP+ + PR+ P P PSPS T+
Sbjct: 185 FGYSPVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIP----- 239
Query: 830 KQREQRNSNFEAEKLASARKRLQENYRDAENAKKQRTIQVMDIHELPKSKSKNTFFGKNQ 651
+ +E + +F+ +ARKRLQ+NYR AENAKKQRTIQVMDIH++PK K K FF + +
Sbjct: 240 RDKEHKEVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPK-KGGFFPR-K 292
Query: 650 GGGSSQGRHW 621
GG S GRHW
Sbjct: 293 GGSSQGGRHW 302
>gb|AAM08816.1|AC090486_26 Hypothetical protein [Oryza sativa]
gi|20303621|gb|AAM19048.1|AC099774_10 putative membrane
spanning protein [Oryza sativa (japonica
cultivar-group)]
Length = 274
Score = 54.3 bits (129), Expect = 3e-06
Identities = 33/81 (40%), Positives = 44/81 (53%)
Frame = -2
Query: 914 KPKVIPRQTPPKPTPSPSVTTLAFTPQNKQREQRNSNFEAEKLASARKRLQENYRDAENA 735
K P P PT SP T + +RE+ + + KLA A+++LQE Y DA +A
Sbjct: 174 KANTPPAAQKPAPTASPKKTA------SNKREEAPALVDEAKLAVAKRKLQEGYEDAASA 227
Query: 734 KKQRTIQVMDIHELPKSKSKN 672
KKQR IQV+D P+ K KN
Sbjct: 228 KKQRMIQVID---APRKKVKN 245
>dbj|BAC16486.1| contains ESTs
AU092606(C52561),AU063213(C53672),C27675(C52561)~unknown
protein [Oryza sativa (japonica cultivar-group)]
gi|23495719|dbj|BAC19931.1| contains ESTs
AU092606(C52561),AU063213(C53672),C27675(C52561)~unknown
protein [Oryza sativa (japonica cultivar-group)]
Length = 435
Score = 53.5 bits (127), Expect = 5e-06
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Frame = -2
Query: 965 PHNGSSGSDRNHSEAEPKPKVIPRQTPPKPTPSPSVTTLAFTPQNKQREQ----RNSNFE 798
P N SG R + P Q +P PS + + +N R + +N+ E
Sbjct: 312 PSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSDK--SASHHDENSVRAKLELAKNAKLE 369
Query: 797 ---AEKLASARKRLQENYRDAENAKKQRTIQVMDIHELPKSKSKN 672
+ KL +++LQE Y++ +NAKKQRTIQ++D LPK ++N
Sbjct: 370 LTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQANRN 414
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 899,696,099
Number of Sequences: 1393205
Number of extensions: 21545027
Number of successful extensions: 86488
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 70674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84346
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 56574306528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
