Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002655A_C01 KMC002655A_c01
(622 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P57720|AROC_ARATH Chorismate synthase, chloroplast precursor ... 110 1e-23
ref|NP_564534.1| chorismate synthase, putative; protein id: At1g... 110 1e-23
sp|Q42884|ARC1_LYCES Chorismate synthase 1, chloroplast precurso... 110 1e-23
sp|P27793|AROC_CORSE Chorismate synthase, chloroplast precursor ... 105 6e-22
sp|Q42885|ARC2_LYCES Chorismate synthase 2, chloroplast precurso... 103 2e-21
>sp|P57720|AROC_ARATH Chorismate synthase, chloroplast precursor
(5-enolpyruvylshikimate-3-phosphate phospholyase)
gi|25292275|pir||C96526 probable chorismate synthase
[imported] - Arabidopsis thaliana
gi|12321114|gb|AAG50662.1|AC084242_6 chorismate
synthase, putative [Arabidopsis thaliana]
Length = 435
Score = 110 bits (276), Expect = 1e-23
Identities = 55/74 (74%), Positives = 65/74 (87%)
Frame = -2
Query: 621 KKQLTVTRERKETELITRARHDPCVVPRAVPMVEAVVALVLVDQLMAQHAQCNLFPINSE 442
+KQ TVTR++ ETE+I R RHDPCVVPRAVPMVEA+VALVLVDQLMAQ+AQC+LFPIN E
Sbjct: 360 RKQNTVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCHLFPINPE 419
Query: 441 LQDPLSSIFEPEEA 400
LQ+PL I +P+ A
Sbjct: 420 LQEPL-QIEQPQNA 432
>ref|NP_564534.1| chorismate synthase, putative; protein id: At1g48850.1, supported
by cDNA: gi_15982823 [Arabidopsis thaliana]
gi|15982824|gb|AAL09759.1| At1g48850/T24P22_3
[Arabidopsis thaliana]
Length = 436
Score = 110 bits (276), Expect = 1e-23
Identities = 55/74 (74%), Positives = 65/74 (87%)
Frame = -2
Query: 621 KKQLTVTRERKETELITRARHDPCVVPRAVPMVEAVVALVLVDQLMAQHAQCNLFPINSE 442
+KQ TVTR++ ETE+I R RHDPCVVPRAVPMVEA+VALVLVDQLMAQ+AQC+LFPIN E
Sbjct: 361 RKQNTVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCHLFPINPE 420
Query: 441 LQDPLSSIFEPEEA 400
LQ+PL I +P+ A
Sbjct: 421 LQEPL-QIEQPQNA 433
>sp|Q42884|ARC1_LYCES Chorismate synthase 1, chloroplast precursor
(5-enolpyruvylshikimate-3-phosphate phospholyase 1)
gi|542026|pir||S40410 chorismate synthase (EC 4.2.3.5) 1
precursor - tomato gi|410482|emb|CAA79859.1| chorismate
synthase 1 [Lycopersicon esculentum]
Length = 440
Score = 110 bits (275), Expect = 1e-23
Identities = 55/74 (74%), Positives = 63/74 (84%)
Frame = -2
Query: 621 KKQLTVTRERKETELITRARHDPCVVPRAVPMVEAVVALVLVDQLMAQHAQCNLFPINSE 442
+KQ TVTR++ ETELI R RHDPCVVPRAVPMVEA+VALVLVDQLMAQ++QC +FPIN E
Sbjct: 365 RKQQTVTRDKHETELIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYSQCMMFPINPE 424
Query: 441 LQDPLSSIFEPEEA 400
LQ+PL S PE A
Sbjct: 425 LQEPLQS--SPESA 436
>sp|P27793|AROC_CORSE Chorismate synthase, chloroplast precursor
(5-enolpyruvylshikimate-3-phosphate phospholyase)
gi|99502|pir||A41197 chorismate synthase (EC 4.2.3.5)
precursor [validated] - pink corydalis
gi|18256|emb|CAA43034.1| chorismate synthase [Corydalis
sempervirens]
Length = 447
Score = 105 bits (261), Expect = 6e-22
Identities = 53/66 (80%), Positives = 57/66 (86%)
Frame = -2
Query: 621 KKQLTVTRERKETELITRARHDPCVVPRAVPMVEAVVALVLVDQLMAQHAQCNLFPINSE 442
KKQ TVTRER+E ELI R RHDPCVVPRAVPMVEA+VALVL+DQLM QHAQ NLF IN
Sbjct: 369 KKQNTVTREREEIELIARGRHDPCVVPRAVPMVEAMVALVLLDQLMLQHAQGNLFSINPA 428
Query: 441 LQDPLS 424
LQ+PLS
Sbjct: 429 LQEPLS 434
>sp|Q42885|ARC2_LYCES Chorismate synthase 2, chloroplast precursor
(5-enolpyruvylshikimate-3-phosphate phospholyase 2)
gi|542027|pir||S40409 chorismate synthase (EC 4.2.3.5) 2
precursor - tomato gi|410484|emb|CAA79854.1| chorismate
synthase 2 [Lycopersicon esculentum]
Length = 431
Score = 103 bits (256), Expect = 2e-21
Identities = 49/65 (75%), Positives = 57/65 (87%)
Frame = -2
Query: 621 KKQLTVTRERKETELITRARHDPCVVPRAVPMVEAVVALVLVDQLMAQHAQCNLFPINSE 442
+KQ TV+R++ ETELI R RHDPCVVPRAVPMVEA+VALVLVDQLM Q+AQC LFP+N
Sbjct: 359 RKQHTVSRDKHETELIARGRHDPCVVPRAVPMVEAMVALVLVDQLMTQYAQCMLFPVNLT 418
Query: 441 LQDPL 427
LQ+PL
Sbjct: 419 LQEPL 423
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,103,540
Number of Sequences: 1393205
Number of extensions: 11462698
Number of successful extensions: 33293
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 31299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33207
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
