>KMC002378A_C01 KMC002378A_c01
ccccacagaaatttttacaggtactatggataataaaagtttaattagatgctaaagtat
aggtagctctaaatagtaaaTATATCACACAAACTCTCAATCATTCAGTGGGACAAACCC
ACGAGAACATAAAGAACTCTTCGGACTTCAATCTGTCTATACAGCACAACATTCCTCTGG
TTAGCAGTTATATGTACTTGAAAATTAAGGCTATGAAAACATCATTATTCAAAGCACAAA
CAAAACACTCATGACCGTAAGGAAGCTCATGAACCTGAAAATGTAAGAACTTTAACCAGC
ACATGTAAATACAACTAAAATCACAAAAATGCTACAATGAAAAACCAGGTGCCAAGAAGG
AAGTCAAGTGCCGGAGTAGACACATAGGAAATGCCAAAGTGTTGCATGCTCGGTTCCACG
CTGAAATGCTCTAGAATCATTTCTGGTTAGAAGCTACAAGTCTAAGCTTCTGAGTAAAGG
TGCCTGGGATTTGGTGCAAATCGTGAAACCGAACATCTACCGTGAGTGACTTGGCAATTA
CTGGTTCAACTGCACAAACATCTCAATCATATGATAAATCAAAGTAAGCAATTTAACATT
CTGGGAGGGAGTTTGCAGATGCAAACGGTGAGAAGCTCGCCGCCGATTCGCTGTACCGGA
GTGGATGCTGTTGATGACTGGAAGAACCAATAAAACTTGCTGTTGACTCACTATACCGGA
GTGTACGTTGTTGGTGACTGGAAGAACCAATATAACTCACTGAAGCATCGCTTGGACTCG
GAATGTGTGG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC002378A_C01 KMC002378A_c01
         (790 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G96742 unknown protein F17M19.13 [imported] - Arabidopsis t...    55  9e-07
gb|AAF32326.1|AF218808_1 ReMembR-H2 protein JR702 [Arabidopsis t...    55  9e-07
ref|NP_177343.2| unknown protein; protein id: At1g71980.1, suppo...    55  9e-07
ref|NP_191075.2| putative protein; protein id: At3g55150.1, supp...    35  1.6
ref|XP_240326.1| hypothetical protein XP_240326 [Rattus norvegicus]    35  1.6

>pir||G96742 unknown protein F17M19.13 [imported] - Arabidopsis thaliana
           gi|12324534|gb|AAG52220.1|AC021665_3 unknown protein;
           70660-72219 [Arabidopsis thaliana]
          Length = 424

 Score = 55.5 bits (132), Expect = 9e-07
 Identities = 33/79 (41%), Positives = 44/79 (54%), Gaps = 17/79 (21%)
 Frame = -1

Query: 781 PSPSDASVSYIGSSSHQQR---------TLRY--------SESTASFIGSSSHQQHPLRY 653
           PSPS +  SYI   +  Q            RY        S ++ +  GSS++  +PLRY
Sbjct: 346 PSPSPSQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLNPLRY 405

Query: 652 SESAASFSPFASANSLPEC 596
           SESA +FSP+ASANSLP+C
Sbjct: 406 SESAGTFSPYASANSLPDC 424

>gb|AAF32326.1|AF218808_1 ReMembR-H2 protein JR702 [Arabidopsis thaliana]
          Length = 444

 Score = 55.5 bits (132), Expect = 9e-07
 Identities = 33/79 (41%), Positives = 44/79 (54%), Gaps = 17/79 (21%)
 Frame = -1

Query: 781 PSPSDASVSYIGSSSHQQR---------TLRY--------SESTASFIGSSSHQQHPLRY 653
           PSPS +  SYI   +  Q            RY        S ++ +  GSS++  +PLRY
Sbjct: 366 PSPSPSQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLNPLRY 425

Query: 652 SESAASFSPFASANSLPEC 596
           SESA +FSP+ASANSLP+C
Sbjct: 426 SESAGTFSPYASANSLPDC 444

>ref|NP_177343.2| unknown protein; protein id: At1g71980.1, supported by cDNA:
           gi_17529199 [Arabidopsis thaliana]
           gi|17529200|gb|AAL38826.1| unknown protein [Arabidopsis
           thaliana] gi|22136866|gb|AAM91777.1| unknown protein
           [Arabidopsis thaliana]
          Length = 448

 Score = 55.5 bits (132), Expect = 9e-07
 Identities = 33/79 (41%), Positives = 44/79 (54%), Gaps = 17/79 (21%)
 Frame = -1

Query: 781 PSPSDASVSYIGSSSHQQR---------TLRY--------SESTASFIGSSSHQQHPLRY 653
           PSPS +  SYI   +  Q            RY        S ++ +  GSS++  +PLRY
Sbjct: 370 PSPSPSQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLNPLRY 429

Query: 652 SESAASFSPFASANSLPEC 596
           SESA +FSP+ASANSLP+C
Sbjct: 430 SESAGTFSPYASANSLPDC 448

>ref|NP_191075.2| putative protein; protein id: At3g55150.1, supported by cDNA:
           gi_18377617, supported by cDNA: gi_20465378 [Arabidopsis
           thaliana] gi|18377618|gb|AAL66959.1| unknown protein
           [Arabidopsis thaliana] gi|20465379|gb|AAM20093.1|
           unknown protein [Arabidopsis thaliana]
          Length = 636

 Score = 34.7 bits (78), Expect = 1.6
 Identities = 25/77 (32%), Positives = 35/77 (44%), Gaps = 2/77 (2%)
 Frame = +1

Query: 538 LLVQLHKHLNHMINQSKQFNILGGSLQM--QTVRSSPPIRCTGVDAVDDWKNQ*NLLLTH 711
           LL +L     H  + S  +  L  +LQ+  +TV S+P     G    DDW N+    L  
Sbjct: 444 LLCKLDTKAEHYKDVSLSYLFLANNLQIIIETVGSTPLRNLLG----DDWLNKHEDKLCA 499

Query: 712 YTGVYVVGDWKNQYNSL 762
           Y G Y +  W N + SL
Sbjct: 500 YAGNYEIAAWSNVFMSL 516

>ref|XP_240326.1| hypothetical protein XP_240326 [Rattus norvegicus]
          Length = 187

 Score = 34.7 bits (78), Expect = 1.6
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = -1

Query: 385 MCLLRHLTSFLAPGFSL*HFCDF----SCIYMCWLKFLHFQVHELPYGHEC---FVCALN 227
           MC LRH+ S L    SL H C      S I+MCWL+ +   +H     H C    +C+L 
Sbjct: 19  MCSLRHMCS-LRHMCSLRHMCSLRHKCSLIHMCWLRHMCSLIHMCSLRHMCSLRHMCSLR 77

Query: 226 N 224
           +
Sbjct: 78  H 78

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 639,197,674
Number of Sequences: 1393205
Number of extensions: 13292947
Number of successful extensions: 33139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 30698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32817
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39495713322
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 SPDL067e07_f BP056168 1 472 2 MF097g03_f BP033365 84 575 3 GENf060e11 BP060908 86 435 4 MR041f01_f BP079179 178 551 5 MFB003e05_f BP034118 180 725 6 MR094c09_f BP083216 196 588 7 MFB055d05_f BP037988 205 743 8 MFB021h02_f BP035530 205 790 9 MR032b10_f BP078444 207 597 10 GNf049d04 BP070988 207 596 11 GNf004e07 BP067674 220 728 12 MPD015d02_f AV771017 223 714 13 MR076e05_f BP081854 233 747

---