Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002191A_C01 KMC002191A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_683563.1| expressed protein; protein id: At3g13410.2, sup... 121 8e-27
gb|AAN60225.1| unknown [Arabidopsis thaliana] 121 8e-27
gb|AAM67353.1| unknown [Arabidopsis thaliana] 121 8e-27
ref|NP_566456.2| expressed protein; protein id: At3g13410.1, sup... 121 8e-27
gb|AAL96729.2| hypothetical protein [Dictyostelium discoideum] 36 0.45
>ref|NP_683563.1| expressed protein; protein id: At3g13410.2, supported by cDNA:
gi_14334707, supported by cDNA: gi_16323423 [Arabidopsis
thaliana] gi|14334708|gb|AAK59532.1| unknown protein
[Arabidopsis thaliana] gi|16323424|gb|AAL15206.1|
unknown protein [Arabidopsis thaliana]
Length = 321
Score = 121 bits (303), Expect = 8e-27
Identities = 62/95 (65%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
Frame = -2
Query: 609 SVEESGAKYAVLYVSDPSRSIKYPSYRELQRFLAESTNGNESSN-ATICNPVCQLASSLL 433
SVE+SG+KY LYVSDP Y SY+ LQRFLAE+ GN + AT C+ +C+ SSLL
Sbjct: 230 SVEQSGSKYTALYVSDP---YWYTSYKTLQRFLAETAKGNSTPEIATGCDELCKFKSSLL 286
Query: 432 EGLIVGIVLLIILISGLCCMMGIDTPTRFETPQES 328
EG++VGIV L+ILISGLCCM GIDTPTRFETPQ+S
Sbjct: 287 EGILVGIVFLLILISGLCCMAGIDTPTRFETPQDS 321
>gb|AAN60225.1| unknown [Arabidopsis thaliana]
Length = 321
Score = 121 bits (303), Expect = 8e-27
Identities = 62/95 (65%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
Frame = -2
Query: 609 SVEESGAKYAVLYVSDPSRSIKYPSYRELQRFLAESTNGNESSN-ATICNPVCQLASSLL 433
SVE+SG+KY LYVSDP Y SY+ LQRFLAE+ GN + AT C+ +C+ SSLL
Sbjct: 230 SVEQSGSKYTALYVSDP---YWYTSYKTLQRFLAETAKGNSTPEIATGCDELCKFKSSLL 286
Query: 432 EGLIVGIVLLIILISGLCCMMGIDTPTRFETPQES 328
EG++VGIV L+ILISGLCCM GIDTPTRFETPQ+S
Sbjct: 287 EGILVGIVFLLILISGLCCMAGIDTPTRFETPQDS 321
>gb|AAM67353.1| unknown [Arabidopsis thaliana]
Length = 203
Score = 121 bits (303), Expect = 8e-27
Identities = 62/95 (65%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
Frame = -2
Query: 609 SVEESGAKYAVLYVSDPSRSIKYPSYRELQRFLAESTNGNESSN-ATICNPVCQLASSLL 433
SVE+SG+KY LYVSDP Y SY+ LQRFLAE+ GN + AT C+ +C+ SSLL
Sbjct: 112 SVEQSGSKYTALYVSDP---YWYTSYKTLQRFLAETAKGNSTPEIATGCDELCKFKSSLL 168
Query: 432 EGLIVGIVLLIILISGLCCMMGIDTPTRFETPQES 328
EG++VGIV L+ILISGLCCM GIDTPTRFETPQ+S
Sbjct: 169 EGILVGIVFLLILISGLCCMAGIDTPTRFETPQDS 203
>ref|NP_566456.2| expressed protein; protein id: At3g13410.1, supported by cDNA:
11439. [Arabidopsis thaliana]
Length = 183
Score = 121 bits (303), Expect = 8e-27
Identities = 62/95 (65%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
Frame = -2
Query: 609 SVEESGAKYAVLYVSDPSRSIKYPSYRELQRFLAESTNGNESSN-ATICNPVCQLASSLL 433
SVE+SG+KY LYVSDP Y SY+ LQRFLAE+ GN + AT C+ +C+ SSLL
Sbjct: 92 SVEQSGSKYTALYVSDP---YWYTSYKTLQRFLAETAKGNSTPEIATGCDELCKFKSSLL 148
Query: 432 EGLIVGIVLLIILISGLCCMMGIDTPTRFETPQES 328
EG++VGIV L+ILISGLCCM GIDTPTRFETPQ+S
Sbjct: 149 EGILVGIVFLLILISGLCCMAGIDTPTRFETPQDS 183
>gb|AAL96729.2| hypothetical protein [Dictyostelium discoideum]
Length = 295
Score = 35.8 bits (81), Expect = 0.45
Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 4/61 (6%)
Frame = -2
Query: 504 STNGNESSNATICNPVCQ----LASSLLEGLIVGIVLLIILISGLCCMMGIDTPTRFETP 337
S G+ SS++ P Q + +L ++ +LL IL +G+CC+ + P R+E P
Sbjct: 231 SQQGSGSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDRYEAP 290
Query: 336 Q 334
+
Sbjct: 291 K 291
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,514,674
Number of Sequences: 1393205
Number of extensions: 10975033
Number of successful extensions: 24227
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24215
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
