Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001818A_C01 KMC001818A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB51544.1| RAD23 protein [Lycopersicon esculentum] 236 3e-61
ref|NP_198663.1| DNA repair protein RAD23 homolog; protein id: A... 227 1e-58
ref|NP_186903.1| putative RAD23; protein id: At3g02540.1, suppor... 225 4e-58
gb|AAK59766.1| unknown protein [Arabidopsis thaliana] 225 5e-58
pir||T14336 RAD23 protein, isoform I - carrot gi|1914683|emb|CAA... 215 5e-55
>emb|CAB51544.1| RAD23 protein [Lycopersicon esculentum]
Length = 389
Score = 236 bits (601), Expect = 3e-61
Identities = 117/131 (89%), Positives = 125/131 (95%)
Frame = -2
Query: 661 AGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINE 482
AGAG+LDFLRNS QFQALRAMVQANPQILQPMLQELGKQNPHLMRLI++HQ DFLRLINE
Sbjct: 260 AGAGNLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINE 319
Query: 481 PVEGGEGNPLGQLAGGIPQAITVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAAN 302
PVEG EGN LGQ AG IPQA+TVTPEER+AIERLEAMGFDRA+VLEV+FACNKNEELAAN
Sbjct: 320 PVEG-EGNVLGQTAGAIPQAVTVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAAN 378
Query: 301 YLLDHMHEFDE 269
YLLDH+HEFDE
Sbjct: 379 YLLDHLHEFDE 389
>ref|NP_198663.1| DNA repair protein RAD23 homolog; protein id: At5g38470.1,
supported by cDNA: 36697., supported by cDNA:
gi_14335003, supported by cDNA: gi_16648837, supported
by cDNA: gi_19548080 [Arabidopsis thaliana]
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23
homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis
thaliana] gi|19548081|gb|AAL87405.1| At5g38470/At5g38470
[Arabidopsis thaliana] gi|21593157|gb|AAM65106.1| DNA
repair protein RAD23 homolog [Arabidopsis thaliana]
Length = 378
Score = 227 bits (578), Expect = 1e-58
Identities = 113/133 (84%), Positives = 124/133 (92%)
Frame = -2
Query: 664 GAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLIN 485
GAGAG+LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNP L+RLI++HQADFLRLIN
Sbjct: 247 GAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLIN 306
Query: 484 EPVEGGEGNPLGQLAGGIPQAITVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAA 305
EPVE GE N + QL +PQA+TVTPEER+AIERLE MGFDRA+VLEVFFACNKNEELAA
Sbjct: 307 EPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAA 365
Query: 304 NYLLDHMHEFDEQ 266
NYLLDHMHEF++Q
Sbjct: 366 NYLLDHMHEFEDQ 378
>ref|NP_186903.1| putative RAD23; protein id: At3g02540.1, supported by cDNA:
gi_14517453 [Arabidopsis thaliana]
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis
thaliana] gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17
[Arabidopsis thaliana] gi|21360453|gb|AAM47342.1|
AT3g02540/F16B3_17 [Arabidopsis thaliana]
Length = 419
Score = 225 bits (574), Expect = 4e-58
Identities = 115/134 (85%), Positives = 125/134 (92%), Gaps = 4/134 (2%)
Frame = -2
Query: 658 GAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEP 479
GAG+LDFLRNSQQFQALRAMVQANPQ+LQPMLQELGKQNP+LMRLI+DHQADFLRLINEP
Sbjct: 286 GAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEP 345
Query: 478 VEGG--EGNPLGQLAGGI--PQAITVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEEL 311
VEGG GN LGQ+A G+ PQAI VT EER+AIERLEAMGF+RA+VLEVFFACNKNEEL
Sbjct: 346 VEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEEL 405
Query: 310 AANYLLDHMHEFDE 269
AANYLLDHMHEF+E
Sbjct: 406 AANYLLDHMHEFEE 419
>gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 225 bits (573), Expect = 5e-58
Identities = 112/133 (84%), Positives = 123/133 (92%)
Frame = -2
Query: 664 GAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLIN 485
GAGAG+LDFLRNS QFQALRAMVQANPQILQPMLQELGKQNP L+RLI++HQADFLRLIN
Sbjct: 247 GAGAGNLDFLRNSHQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLIN 306
Query: 484 EPVEGGEGNPLGQLAGGIPQAITVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAA 305
EPVE GE N + QL +PQA+TVTPEER+AIERLE MGFDRA+VLEVFFACNKNEELAA
Sbjct: 307 EPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAA 365
Query: 304 NYLLDHMHEFDEQ 266
NYLLDHMHEF++Q
Sbjct: 366 NYLLDHMHEFEDQ 378
>pir||T14336 RAD23 protein, isoform I - carrot gi|1914683|emb|CAA72741.1| RAD23,
isoform I [Daucus carota]
Length = 382
Score = 215 bits (547), Expect = 5e-55
Identities = 108/130 (83%), Positives = 118/130 (90%)
Frame = -2
Query: 661 AGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINE 482
AGAG+LDFLR +QQFQALRAMVQ+NPQILQPMLQELGKQNPHLMRLI++HQADFL+LINE
Sbjct: 258 AGAGNLDFLRTNQQFQALRAMVQSNPQILQPMLQELGKQNPHLMRLIQEHQADFLQLINE 317
Query: 481 PVEGGEGNPLGQLAGGIPQAITVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAAN 302
P+EGGE L G PQAI+VTPEER AIERLEAMGFDR +VLEVFFACNKNEELAAN
Sbjct: 318 PMEGGE-----NLLGHGPQAISVTPEERDAIERLEAMGFDRELVLEVFFACNKNEELAAN 372
Query: 301 YLLDHMHEFD 272
YLLDHMHEF+
Sbjct: 373 YLLDHMHEFE 382
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,974,518
Number of Sequences: 1393205
Number of extensions: 12824440
Number of successful extensions: 42942
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 40788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42869
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
