Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001739A_C01 KMC001739A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06391 isoprenylated protein - soybean (fragment) gi|532701... 141 6e-33
pir||T09338 DnaJ-like protein MsJ1 - alfalfa gi|2370312|emb|CAA0... 130 1e-29
emb|CAC39071.1| DnaJ-like protein [Oryza sativa] 127 9e-29
pir||T43929 DnaJ protein homolog [imported] - Salix gilgiana gi|... 120 1e-26
pir||T01643 DnaJ protein homolog ZMDJ1 - maize gi|2984709|gb|AAC... 117 1e-25
>pir||T06391 isoprenylated protein - soybean (fragment) gi|532701|gb|AAA65011.1|
similar to Atriplex nummularia chaperone ANJ1 protein,
Swiss-Prot Accession Number JQ2142
Length = 86
Score = 141 bits (356), Expect = 6e-33
Identities = 72/89 (80%), Positives = 80/89 (88%), Gaps = 1/89 (1%)
Frame = -2
Query: 591 LYIKFNVDFPDSGFISPDQCQLLEKILPQKSSKK-ADMELDDCEETILHDVNNLEEEMRR 415
LYI+FNVDFPDSGF+SPDQCQLLEK+LPQKSSK +DMELDDCEET LHDV N +EEMRR
Sbjct: 1 LYIQFNVDFPDSGFLSPDQCQLLEKVLPQKSSKHVSDMELDDCEETTLHDV-NFKEEMRR 59
Query: 414 RKQQRSREAYDEDEDDDEPSTQRVQCAQQ 328
++QQ+ REAY DEDDDEPS QRVQCAQQ
Sbjct: 60 KQQQQYREAY--DEDDDEPSGQRVQCAQQ 86
>pir||T09338 DnaJ-like protein MsJ1 - alfalfa gi|2370312|emb|CAA04447.1|
DnaJ-like protein [Medicago sativa]
gi|3202020|gb|AAC19391.1| DnaJ-like protein MsJ1
[Medicago sativa]
Length = 423
Score = 130 bits (327), Expect = 1e-29
Identities = 70/98 (71%), Positives = 80/98 (81%), Gaps = 2/98 (2%)
Frame = -2
Query: 615 GRPFIKGRLYIKFNVDFPDSGFISPDQCQLLEKILPQKSSKK-ADMELDDCEETILHDVN 439
GRPF+KGRLYIKF+VDFPDSGF+SP Q LEKILPQK+SK + E+DDCEET LHDV
Sbjct: 328 GRPFMKGRLYIKFSVDFPDSGFLSPSQSLELEKILPQKTSKNLSQKEVDDCEETTLHDV- 386
Query: 438 NLEEEMRRRKQQRSREAYDEDED-DDEPSTQRVQCAQQ 328
N+ EEM R+KQQ REAYD+D+D DDE S RVQCAQQ
Sbjct: 387 NIAEEMSRKKQQ-YREAYDDDDDEDDEHSQPRVQCAQQ 423
>emb|CAC39071.1| DnaJ-like protein [Oryza sativa]
Length = 420
Score = 127 bits (320), Expect = 9e-29
Identities = 60/97 (61%), Positives = 80/97 (81%), Gaps = 1/97 (1%)
Frame = -2
Query: 615 GRPFIKGRLYIKFNVDFPDSGFISPDQCQLLEKILPQK-SSKKADMELDDCEETILHDVN 439
GRPF+KGRL+++FNV+FP+ G ++P QC+ LEKILP + ++ +DMELD CEET +HDV
Sbjct: 325 GRPFMKGRLFVEFNVEFPEPGALTPGQCRSLEKILPPRPRNQLSDMELDQCEETTMHDV- 383
Query: 438 NLEEEMRRRKQQRSREAYDEDEDDDEPSTQRVQCAQQ 328
N+EEEMRRR+Q R +EAYDED+D+D + RVQCAQQ
Sbjct: 384 NIEEEMRRRQQHRRQEAYDEDDDEDAGAGPRVQCAQQ 420
>pir||T43929 DnaJ protein homolog [imported] - Salix gilgiana
gi|4589726|dbj|BAA76883.1| DnaJ homolog protein [Salix
gilgiana] gi|4589739|dbj|BAA76888.1| DnaJ homolog
protein [Salix gilgiana]
Length = 423
Score = 120 bits (302), Expect = 1e-26
Identities = 58/96 (60%), Positives = 77/96 (79%), Gaps = 1/96 (1%)
Frame = -2
Query: 612 RPFIKGRLYIKFNVDFPDSGFISPDQCQLLEKILPQKSSKK-ADMELDDCEETILHDVNN 436
RPF++G+LYI FNV FPDSG +SP+QC+ LE ILP + SK ++ME+D+CEETI+HDVN
Sbjct: 329 RPFMRGKLYIHFNVVFPDSGTLSPEQCRTLETILPPRQSKNLSEMEIDNCEETIMHDVNM 388
Query: 435 LEEEMRRRKQQRSREAYDEDEDDDEPSTQRVQCAQQ 328
EE+ R+++Q+ EAYDEDE ++E S RVQCAQQ
Sbjct: 389 EEEKRRKQQQRHQHEAYDEDE-EEESSMPRVQCAQQ 423
>pir||T01643 DnaJ protein homolog ZMDJ1 - maize gi|2984709|gb|AAC08009.1|
DnaJ-related protein ZMDJ1 [Zea mays]
Length = 419
Score = 117 bits (293), Expect = 1e-25
Identities = 57/96 (59%), Positives = 76/96 (78%), Gaps = 1/96 (1%)
Frame = -2
Query: 612 RPFIKGRLYIKFNVDFPDSGFISPDQCQLLEKILPQK-SSKKADMELDDCEETILHDVNN 436
RPF+KG+LYI F V+FPDS ++P+QC+ LE +LP + SSK DME+D+CEET +HDVNN
Sbjct: 327 RPFMKGKLYIHFTVEFPDS--LAPEQCKALETVLPPRPSSKLTDMEIDECEETTMHDVNN 384
Query: 435 LEEEMRRRKQQRSREAYDEDEDDDEPSTQRVQCAQQ 328
+EEEMRR++ ++EAY+ED D+ QRVQCAQQ
Sbjct: 385 IEEEMRRKQAHAAQEAYEED-DEMPGGAQRVQCAQQ 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,728,674
Number of Sequences: 1393205
Number of extensions: 10745870
Number of successful extensions: 63771
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 46151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57756
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
