Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001724A_C02 KMC001724A_c02
(694 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191703.1| cysteine synthase AtcysC1; protein id: At3g6144... 196 2e-49
dbj|BAB18760.1| beta-cyanoalanine synthase [Solanum tuberosum] 191 8e-48
dbj|BAB20032.1| beta-cyanoalanine synthase like protein [Solanum... 191 8e-48
pir||A55450 cysteine synthase (EC 4.2.99.8) C precursor, mitocho... 191 8e-48
emb|CAC09469.1| cysteine synthase [Oryza sativa (indica cultivar... 182 3e-45
>ref|NP_191703.1| cysteine synthase AtcysC1; protein id: At3g61440.1, supported by
cDNA: 32851., supported by cDNA: gi_20260389, supported
by cDNA: gi_4996615 [Arabidopsis thaliana]
gi|11269071|pir||T47936 cysteine synthase (EC 4.2.99.8)
cysC1 [similarity] - Arabidopsis thaliana
gi|4996616|dbj|BAA78560.1| cysteine synthase
[Arabidopsis thaliana] gi|5824334|emb|CAB54830.1|
cysteine synthase [Arabidopsis thaliana]
gi|6850835|emb|CAB71074.1| cysteine synthase AtcysC1
[Arabidopsis thaliana] gi|20260390|gb|AAM13093.1|
cysteine synthase AtcysC1 [Arabidopsis thaliana]
gi|21592815|gb|AAM64764.1| cysteine synthase AtcysC1
[Arabidopsis thaliana] gi|22136208|gb|AAM91182.1|
cysteine synthase AtcysC1 [Arabidopsis thaliana]
Length = 368
Score = 196 bits (499), Expect = 2e-49
Identities = 98/114 (85%), Positives = 107/114 (92%)
Frame = -3
Query: 692 ESNVLNGGKPGPHHITGNGVGFKPDILDMDVMDKVLEVSSEDAVKMARILALKEGLMLGI 513
ESN+LNGGKPGPH ITGNGVGFKP+ILDMDVM+ VLEVSSEDA+KMAR LALKEGLM+GI
Sbjct: 253 ESNILNGGKPGPHAITGNGVGFKPEILDMDVMESVLEVSSEDAIKMARELALKEGLMVGI 312
Query: 512 SSGANTVAALRLASLPENKGKLIVTIHPSFGERYLSSVLFQELRDEAEKMQPVS 351
SSGANTVAA+RLA +PENKGKLIVTIH SFGERYLSSVLF ELR EAE+M+PVS
Sbjct: 313 SSGANTVAAIRLAKMPENKGKLIVTIHASFGERYLSSVLFDELRKEAEEMKPVS 366
>dbj|BAB18760.1| beta-cyanoalanine synthase [Solanum tuberosum]
Length = 351
Score = 191 bits (485), Expect = 8e-48
Identities = 95/114 (83%), Positives = 106/114 (92%)
Frame = -3
Query: 692 ESNVLNGGKPGPHHITGNGVGFKPDILDMDVMDKVLEVSSEDAVKMARILALKEGLMLGI 513
ESNVLNGG PGPH ITGNGVGFKPDILDMDVM++VL VSSE++V MAR LALKEGLM+GI
Sbjct: 236 ESNVLNGGNPGPHEITGNGVGFKPDILDMDVMEEVLMVSSEESVNMARELALKEGLMVGI 295
Query: 512 SSGANTVAALRLASLPENKGKLIVTIHPSFGERYLSSVLFQELRDEAEKMQPVS 351
SSGANTVAALRLA+ PENKGKLIVTIHPSFGERYLSSVL++++R EA+ MQPVS
Sbjct: 296 SSGANTVAALRLANRPENKGKLIVTIHPSFGERYLSSVLYEDIRKEAQNMQPVS 349
>dbj|BAB20032.1| beta-cyanoalanine synthase like protein [Solanum tuberosum]
Length = 347
Score = 191 bits (485), Expect = 8e-48
Identities = 95/114 (83%), Positives = 105/114 (91%)
Frame = -3
Query: 692 ESNVLNGGKPGPHHITGNGVGFKPDILDMDVMDKVLEVSSEDAVKMARILALKEGLMLGI 513
ESN+LNGGKPGPHHITGNGVG KPDI+DMD+M++VL VSSEDAV MAR LA+KEGLM+GI
Sbjct: 232 ESNILNGGKPGPHHITGNGVGSKPDIVDMDLMEEVLMVSSEDAVNMARELAVKEGLMVGI 291
Query: 512 SSGANTVAALRLASLPENKGKLIVTIHPSFGERYLSSVLFQELRDEAEKMQPVS 351
SSGANTVAALRLA PENKGKLIVT+H SFGERYLSSVL+Q+LR EAE MQPVS
Sbjct: 292 SSGANTVAALRLAQKPENKGKLIVTVHASFGERYLSSVLYQDLRKEAENMQPVS 345
>pir||A55450 cysteine synthase (EC 4.2.99.8) C precursor, mitochondrial -
spinach gi|1066153|dbj|BAA07177.1| cysteine synthase
[Spinacia oleracea]
Length = 368
Score = 191 bits (485), Expect = 8e-48
Identities = 95/113 (84%), Positives = 104/113 (91%)
Frame = -3
Query: 692 ESNVLNGGKPGPHHITGNGVGFKPDILDMDVMDKVLEVSSEDAVKMARILALKEGLMLGI 513
ESN+LNGGKPGPH ITGNGVGFKP+ILDMDVMD VLEV S+DAVKMAR LAL+EGL++GI
Sbjct: 253 ESNILNGGKPGPHLITGNGVGFKPEILDMDVMDAVLEVKSDDAVKMARQLALQEGLLVGI 312
Query: 512 SSGANTVAALRLASLPENKGKLIVTIHPSFGERYLSSVLFQELRDEAEKMQPV 354
SSGANT+AAL LA PENKGKLIVTIHPSFGERYLSS LF+ELR+EAE MQPV
Sbjct: 313 SSGANTIAALDLAKRPENKGKLIVTIHPSFGERYLSSALFKELREEAENMQPV 365
>emb|CAC09469.1| cysteine synthase [Oryza sativa (indica cultivar-group)]
Length = 377
Score = 182 bits (463), Expect = 3e-45
Identities = 92/113 (81%), Positives = 101/113 (88%)
Frame = -3
Query: 692 ESNVLNGGKPGPHHITGNGVGFKPDILDMDVMDKVLEVSSEDAVKMARILALKEGLMLGI 513
E+NVLNGGKPGPH ITGNGVGFKP+IL+MD+M+KVLEV EDAVKMAR LALKEGL++GI
Sbjct: 262 EANVLNGGKPGPHLITGNGVGFKPEILNMDIMEKVLEVKGEDAVKMARELALKEGLLVGI 321
Query: 512 SSGANTVAALRLASLPENKGKLIVTIHPSFGERYLSSVLFQELRDEAEKMQPV 354
SSGANTVAAL LA PENKGKLIVT+ PS GERYLSS LF+ELR EAE MQPV
Sbjct: 322 SSGANTVAALELAKKPENKGKLIVTVLPSLGERYLSSALFEELRAEAEAMQPV 374
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 590,007,577
Number of Sequences: 1393205
Number of extensions: 12253211
Number of successful extensions: 31988
Number of sequences better than 10.0: 364
Number of HSP's better than 10.0 without gapping: 30865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31878
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
