Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001478A_C01 KMC001478A_c01
(685 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568534.1| putative protein; protein id: At5g36230.1, supp... 224 1e-57
dbj|BAB09363.1| gb|AAD26879.1~gene_id:T30G6.9~strong similarity ... 224 1e-57
ref|NP_564845.1| expressed protein; protein id: At1g65220.1, sup... 208 6e-53
gb|AAM63296.1| unknown [Arabidopsis thaliana] 208 6e-53
pir||C96676 hypothetical protein T23K8.13 [imported] - Arabidops... 208 6e-53
>ref|NP_568534.1| putative protein; protein id: At5g36230.1, supported by cDNA:
gi_16323076 [Arabidopsis thaliana]
gi|16323077|gb|AAL15273.1| AT5g36230/T30G6_9
[Arabidopsis thaliana] gi|22531269|gb|AAM97138.1|
putative protein [Arabidopsis thaliana]
Length = 411
Score = 224 bits (570), Expect = 1e-57
Identities = 105/119 (88%), Positives = 113/119 (94%)
Frame = -3
Query: 683 RVLWDVLMDAVQWSGKNQQQNANSALRQVKTWAELLNTFCTTGKLELELLYKVQTQCYED 504
RV+WD LMDAVQWSGKNQQQNANS LRQVKTWA LLNTFCT+GKLELEL+YKVQ QCYED
Sbjct: 293 RVVWDGLMDAVQWSGKNQQQNANSVLRQVKTWAPLLNTFCTSGKLELELMYKVQMQCYED 352
Query: 503 AKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNSKGRQNFLKALEPFVNWLEEAEEEE 327
AKLMK+FPE+VRSLY+ DVLAEDTILHWFRKGTNSKGRQ F+K+LEPFVNWLEEAEEEE
Sbjct: 353 AKLMKVFPEVVRSLYELDVLAEDTILHWFRKGTNSKGRQTFVKSLEPFVNWLEEAEEEE 411
>dbj|BAB09363.1| gb|AAD26879.1~gene_id:T30G6.9~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 429
Score = 224 bits (570), Expect = 1e-57
Identities = 105/119 (88%), Positives = 113/119 (94%)
Frame = -3
Query: 683 RVLWDVLMDAVQWSGKNQQQNANSALRQVKTWAELLNTFCTTGKLELELLYKVQTQCYED 504
RV+WD LMDAVQWSGKNQQQNANS LRQVKTWA LLNTFCT+GKLELEL+YKVQ QCYED
Sbjct: 311 RVVWDGLMDAVQWSGKNQQQNANSVLRQVKTWAPLLNTFCTSGKLELELMYKVQMQCYED 370
Query: 503 AKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNSKGRQNFLKALEPFVNWLEEAEEEE 327
AKLMK+FPE+VRSLY+ DVLAEDTILHWFRKGTNSKGRQ F+K+LEPFVNWLEEAEEEE
Sbjct: 371 AKLMKVFPEVVRSLYELDVLAEDTILHWFRKGTNSKGRQTFVKSLEPFVNWLEEAEEEE 429
>ref|NP_564845.1| expressed protein; protein id: At1g65220.1, supported by cDNA:
21223., supported by cDNA: gi_15810284 [Arabidopsis
thaliana] gi|15810285|gb|AAL07030.1| unknown protein
[Arabidopsis thaliana]
Length = 411
Score = 208 bits (529), Expect = 6e-53
Identities = 94/118 (79%), Positives = 108/118 (90%)
Frame = -3
Query: 680 VLWDVLMDAVQWSGKNQQQNANSALRQVKTWAELLNTFCTTGKLELELLYKVQTQCYEDA 501
V+WD +M+AVQWSGKNQQQN+N+ LRQVKTWA LLNT C+TG +E+EL+YKVQ QCYEDA
Sbjct: 294 VIWDGIMNAVQWSGKNQQQNSNAVLRQVKTWAPLLNTLCSTGNMEMELMYKVQMQCYEDA 353
Query: 500 KLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNSKGRQNFLKALEPFVNWLEEAEEEE 327
KLMK+FPE+VRSLY+ DVLAEDTILHW+RKGTN KGRQ F+K LEPFVNWLEEAEEEE
Sbjct: 354 KLMKVFPEVVRSLYELDVLAEDTILHWYRKGTNPKGRQTFVKGLEPFVNWLEEAEEEE 411
>gb|AAM63296.1| unknown [Arabidopsis thaliana]
Length = 411
Score = 208 bits (529), Expect = 6e-53
Identities = 94/118 (79%), Positives = 108/118 (90%)
Frame = -3
Query: 680 VLWDVLMDAVQWSGKNQQQNANSALRQVKTWAELLNTFCTTGKLELELLYKVQTQCYEDA 501
V+WD +M+AVQWSGKNQQQN+N+ LRQVKTWA LLNT C+TG +E+EL+YKVQ QCYEDA
Sbjct: 294 VIWDRIMNAVQWSGKNQQQNSNAVLRQVKTWAPLLNTLCSTGNMEMELMYKVQMQCYEDA 353
Query: 500 KLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNSKGRQNFLKALEPFVNWLEEAEEEE 327
KLMK+FPE+VRSLY+ DVLAEDTILHW+RKGTN KGRQ F+K LEPFVNWLEEAEEEE
Sbjct: 354 KLMKVFPEVVRSLYELDVLAEDTILHWYRKGTNPKGRQTFVKGLEPFVNWLEEAEEEE 411
>pir||C96676 hypothetical protein T23K8.13 [imported] - Arabidopsis thaliana
gi|4646206|gb|AAD26879.1|AC007230_13 Contains similarity
to gb|D13630 KIAA0005 gene from Homo sapiens. ESTs
gb|T45345, gb|T21086, gb|R90360, gb|T20468, gb|T45191
and gb|AI100459 come from this gene. [Arabidopsis
thaliana]
Length = 426
Score = 208 bits (529), Expect = 6e-53
Identities = 94/118 (79%), Positives = 108/118 (90%)
Frame = -3
Query: 680 VLWDVLMDAVQWSGKNQQQNANSALRQVKTWAELLNTFCTTGKLELELLYKVQTQCYEDA 501
V+WD +M+AVQWSGKNQQQN+N+ LRQVKTWA LLNT C+TG +E+EL+YKVQ QCYEDA
Sbjct: 309 VIWDGIMNAVQWSGKNQQQNSNAVLRQVKTWAPLLNTLCSTGNMEMELMYKVQMQCYEDA 368
Query: 500 KLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNSKGRQNFLKALEPFVNWLEEAEEEE 327
KLMK+FPE+VRSLY+ DVLAEDTILHW+RKGTN KGRQ F+K LEPFVNWLEEAEEEE
Sbjct: 369 KLMKVFPEVVRSLYELDVLAEDTILHWYRKGTNPKGRQTFVKGLEPFVNWLEEAEEEE 426
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,471,274
Number of Sequences: 1393205
Number of extensions: 12752749
Number of successful extensions: 50419
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 41773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46799
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
