Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001326A_C01 KMC001326A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00128823.1| hypothetical protein [Desulfovibrio desulfuri... 33 2.4
ref|XP_242314.1| hypothetical protein XP_242314 [Rattus norvegicus] 32 4.0
gb|EAA15375.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium y... 31 9.0
>ref|ZP_00128823.1| hypothetical protein [Desulfovibrio desulfuricans G20]
Length = 388
Score = 33.1 bits (74), Expect = 2.4
Identities = 14/43 (32%), Positives = 25/43 (57%)
Frame = +2
Query: 317 MLLAICHKKNM*LGSIDDTTENHASDLESEELVSAGAPCKLVA 445
++LA+CH++ + + S DDTTE H ++ E + + P A
Sbjct: 226 VILAMCHRRGIPVASHDDTTEEHVAEAVREGITISEFPTTAAA 268
>ref|XP_242314.1| hypothetical protein XP_242314 [Rattus norvegicus]
Length = 194
Score = 32.3 bits (72), Expect = 4.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 464 PHFLNLMPLTCMELLLKRVLLTPDLKRDFQLYHR*IPVTYFFYG 333
PH N+ L C L+ +L T +K F L HR I ++ F++G
Sbjct: 70 PHVGNVSELRCPTPLVPALLQTGSIKTHFPLVHRVIGMSVFYWG 113
>gb|EAA15375.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium yoelii yoelii]
Length = 1555
Score = 31.2 bits (69), Expect = 9.0
Identities = 17/54 (31%), Positives = 26/54 (47%)
Frame = +2
Query: 251 GSNRNPPSFTPKSPAFFKNKGKMLLAICHKKNM*LGSIDDTTENHASDLESEEL 412
G+N N P T K + GK+L I +M D+ T ++ S++ EEL
Sbjct: 300 GNNNNKPDQTDKKGSNVNKNGKVLRRIDDNSHMKQEQTDNATYDNKSEINEEEL 353
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,392,049
Number of Sequences: 1393205
Number of extensions: 10929825
Number of successful extensions: 24052
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24050
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
