Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001241A_C03 KMC001241A_c03
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG31016.1| tospovirus resistance protein D [Lycopersicon esc... 36 0.35
gb|AAG31017.1| tospovirus resistance protein E [Lycopersicon esc... 34 1.7
>gb|AAG31016.1| tospovirus resistance protein D [Lycopersicon esculentum]
Length = 1263
Score = 36.2 bits (82), Expect = 0.35
Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 1/77 (1%)
Frame = -2
Query: 514 QPRASLALEEEREWRPLSGLSHTRLCRFGPCHKSVNNGASQEKLKI-QWLINFNQIQIYM 338
Q R S +L EE S TR C P + NGAS + + + W+ NF I++ +
Sbjct: 887 QSRVSFSLSEENS----KFASKTRKCSHQPLRSLITNGASFDIISLSSWIHNFRLIKVLV 942
Query: 337 LRRHNSFTSVSSK*EPI 287
L H + S+ +P+
Sbjct: 943 LSSHEVYYVNSATLKPL 959
>gb|AAG31017.1| tospovirus resistance protein E [Lycopersicon esculentum]
Length = 1241
Score = 33.9 bits (76), Expect = 1.7
Identities = 22/77 (28%), Positives = 35/77 (44%), Gaps = 1/77 (1%)
Frame = -2
Query: 514 QPRASLALEEEREWRPLSGLSHTRLCRFGPCHKSVNNGASQEKLKI-QWLINFNQIQIYM 338
Q R S +L EE S TR C P + NGAS + + + W+ N +++ +
Sbjct: 865 QSRVSFSLSEENS----KFASKTRKCSHQPLRSLITNGASFDIISLSSWIHNLRLLKVLV 920
Query: 337 LRRHNSFTSVSSK*EPI 287
L H T S+ +P+
Sbjct: 921 LNSHEVDTVNSATLKPL 937
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,177,558
Number of Sequences: 1393205
Number of extensions: 11172238
Number of successful extensions: 26135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26128
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
