Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001217A_C02 KMC001217A_c02
(772 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL61454.1| olfactory receptor MOR202-35 [Mus musculus] 34 2.0
ref|XP_140651.2| similar to olfactory receptor MOR202-35 [Mus mu... 34 2.0
gb|AAL61064.1| olfactory receptor MOR202-12 [Mus musculus] 33 3.5
ref|XP_228240.1| similar to double homeobox, 4; double homeobox ... 33 5.9
dbj|BAC10861.1| hypothetical protein~predicted by GlimmerM etc. ... 32 7.7
>gb|AAL61454.1| olfactory receptor MOR202-35 [Mus musculus]
Length = 312
Score = 34.3 bits (77), Expect = 2.0
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 186 SRAGVEKRVHTCCSFLCLYIMFYAWTVFSQLITQCVISAPDFMHSSECDQLLD*LLPTPM 365
SRAGV+K + TC S L +FY +F L P H+ + D+++ +
Sbjct: 231 SRAGVQKALSTCVSHLTAVFIFYGTIIFMYL-------QPSSRHAMDTDKIVSVFYTMVI 283
Query: 366 PLL 374
P+L
Sbjct: 284 PML 286
>ref|XP_140651.2| similar to olfactory receptor MOR202-35 [Mus musculus]
Length = 441
Score = 34.3 bits (77), Expect = 2.0
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 186 SRAGVEKRVHTCCSFLCLYIMFYAWTVFSQLITQCVISAPDFMHSSECDQLLD*LLPTPM 365
SRAGV+K + TC S L +FY +F L P H+ + D+++ +
Sbjct: 360 SRAGVQKALSTCVSHLTAVFIFYGTIIFMYL-------QPSSRHAMDTDKIVSVFYTMVI 412
Query: 366 PLL 374
P+L
Sbjct: 413 PML 415
>gb|AAL61064.1| olfactory receptor MOR202-12 [Mus musculus]
Length = 310
Score = 33.5 bits (75), Expect = 3.5
Identities = 18/63 (28%), Positives = 29/63 (45%)
Frame = +3
Query: 186 SRAGVEKRVHTCCSFLCLYIMFYAWTVFSQLITQCVISAPDFMHSSECDQLLD*LLPTPM 365
S AGV+K + TC S +FY T+F L P H+ + D+++ +
Sbjct: 231 SEAGVQKALSTCASHFTAVFIFYGTTIFMYL-------QPSSRHAMDTDKIVSVFYTMVI 283
Query: 366 PLL 374
P+L
Sbjct: 284 PML 286
>ref|XP_228240.1| similar to double homeobox, 4; double homeobox protein 4 [Homo
sapiens] [Rattus norvegicus]
Length = 371
Score = 32.7 bits (73), Expect = 5.9
Identities = 25/66 (37%), Positives = 32/66 (47%), Gaps = 4/66 (6%)
Frame = -3
Query: 254 IKHYVQTQKGATGM--HSFLYPSPGEFLTE--A*PSSKKNVQGRNILFDALSSLPQPGEF 87
I+ + Q Q+ TG F Y S G +T P ++ N+Q R IL A P PG F
Sbjct: 60 IRVWFQNQRSRTGELEEGFGYRSQGSSMTSDGRRPRTRLNLQQRRILVQAFERNPLPG-F 118
Query: 86 LTRHQL 69
TR QL
Sbjct: 119 ATREQL 124
>dbj|BAC10861.1| hypothetical protein~predicted by GlimmerM etc. [Oryza sativa
(japonica cultivar-group)]
Length = 178
Score = 32.3 bits (72), Expect = 7.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 361 RCPFLKVESLG--PQIASGAHETNRNGKKMQQYEDRWQG 471
RCPF++ G P +A GAH +R GK++ + W+G
Sbjct: 88 RCPFIRARGAGMNPPLAGGAHAGSRRGKRV---DWSWEG 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 645,282,275
Number of Sequences: 1393205
Number of extensions: 13779314
Number of successful extensions: 29695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29684
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37815044670
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
